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GrainGenes Sequence Report: BF478964

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Sequence	BF478964
Contig	Ta.4014.2.S1_at NSFT03P2_Contig12020
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC289116
wEST map position	BF478964
NCBI UniGene	Ta.54390
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, strongly similar to NP_001046997.1 Os02g0526400 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Germplasm	Chinese Spring
Species	Triticum aestivum
Cultivar	Chinese Spring
Chromosome	5BL 5DL
Clone Library	Chinese Spring wheat drought stressed leaf cDNA library
Tissue	Leaf
Developmental Stage	Full tillering stage
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE2015_H02_P03ZS Chinese Spring wheat drought stressed leaf cDNA library Triticum aestivum cDNA clone WHE2015_H02_P03, mRNA sequence.
Other Name	WHE2015_H02_P03ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli SOLR
DNA Library	TA036E1X
Clone	WHE2015_H02_P03
Probe	WHE2015_H02_P03
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were given a gradual stress down to 80%, 70% and to 60% RWC at Texas Tech University (D. Zhang in HT Nguyen lab). Total RNA and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab at the University of California, Riverside (Akhunov, Chin, Choi, Close, Fenton , Kianian, Otto, Simons, Zhang). Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were given a gradual stress down to 80%, 70% and to 60% RWC at Texas Tech University (D. Zhang in HT Nguyen lab). Total RNA and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab at the University of California, Riverside (Akhunov, Chin, Choi, Close, Fenton, Kianian, Otto, Simons, Zhang). Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	Ta.4014.2.S1_at 1140 WHE2AFFY Ta.4014.3.S1_at 301 WHE2AFFY Ta.4014.3.S1_at 168 WHE2AFFY
DNA	gataaggctgagtcaacaattgaggagcctattgtagttggaacagaaga aattgcaagagtcgcctcattatggtcgggtattccagtccagcagctga ctgctgatgataaaaagatcttagtaggactggatgatgagcttagaaag cgtgggattggtcaagatgacgctgttgcggcgatatcgcgggcagtgaa gagatcacgtgtaggcctcagtgaccctgacagacctatagctacgatgc tcttttgtggtcctacaggggttggtaaaaccgagcttaccaaagctctt gcggcgagctactttggatcggaatctgctatgcttagactagacatgag tgaatacatggagaggcacacagtgagcaaactgataggctctcctccag ggtacattggatatggtgaaactggtactttgacagaagcagtcaggaga aaaccattcaccgtggtactgcttgatgagatagagaaagctcaccctga tattttcaatatccttctccaaatttttgaagacggtcatctggcagact cacagggtcgcagagtttcgttcaagaatacattgattgtcatgacatca aacgttggttctacatcaattt

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