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GrainGenes Sequence Report: BF484828

Sequence	BF484828
Contig	Ta.23957.2.S1_at NSFT03P2_Contig13407
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC297739
wEST map position	BF484828
NCBI UniGene	Ta.47627
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, moderately similar to NP_001062330.1 Os08g0531000 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Germplasm	Chinese Spring
Species	Triticum aestivum
Cultivar	Chinese Spring
Chromosome	1BL 1DL
Clone Library	Wheat pre-anthesis spike cDNA library
Tissue	Spike before anthesis
Developmental Stage	Adult plant
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE2320_B05_D10ZS Wheat pre-anthesis spike cDNA library Triticum aestivum cDNA clone WHE2320_B05_D10, mRNA sequence.
Other Name	WHE2320_B05_D10ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli SOLR
DNA Library	TA019E1X
Clone	WHE2320_B05_D10
Probe	WHE2320_B05_D10
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Whole spike with awns trimmed, white, green and yellow anther were collected and total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	Ta.23957.2.S1_at 563 WHE2AFFY Ta.23957.2.S1_at 446 WHE2AFFY Ta.23957.2.S1_at 476 WHE2AFFY Ta.23957.2.S1_at 278 WHE2AFFY
DNA	aagcggatcgagtcggcgagagcgagggcgaggacgatggcggcgctccg gctagcgttgaggaggttttgcgaccgtgcgctcgggagatcagcgggca tttacgagctcaaggctgccaaggaattccccgacattgatcctgggcat ctcaaggctgccaggaaattccccaaacttcgtgtcaaggatgccgatgc tacggctctgaatgtcttcaagattctccgggacagtccagtcgatggtc ataaagatgtaacccttcgtgaagtgcgcatgactctgaggaccttggct gagattcaggaagaagaagaatgaagatggcgctactaggaagcaatatc gtctcttgctctaatatgaactagctttgcagtattgtagtatttgaatc tttcctatgttgtcgctctgtgtctcgatcttcaaaactgctggacggat gtgatgttttgctattttcttgcttcgcaaggttgaatcgtcctttgatc ttgacatgcccaccagattcgagtgtaagctttggggctagcaatagggg cggcatgtacttggtattcgtaagatttgctggatgcttgtactcagttt ccttaaattataaaata

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