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GrainGenes Sequence Report: BF485408

Sequence
BF485408
Contig
Ta.7298.1.S1_s_at
Ta.7298.2.S1_a_at
NSFT03P2_Contig12001
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC341643
wEST map position
BF485408
NCBI UniGene
Ta.7298
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, strongly similar to NP_001061137.1 Os08g0180100 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
7BL
Clone Library
Wheat pre-anthesis spike cDNA library
Tissue
Spike before anthesis
Developmental Stage
Adult plant
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE2311_C08_F15ZS Wheat pre-anthesis spike cDNA library Triticum aestivum cDNA clone WHE2311_C08_F15, mRNA sequence.
Other Name
WHE2311_C08_F15ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA019E1X
Clone
WHE2311_C08_F15
Probe
WHE2311_C08_F15
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Whole spike with awns trimmed, white, green and yellow anther were collected and total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.7298.1.S1_s_at850WHE2AFFY
Ta.7298.1.S1_s_at111WHE2AFFY
Ta.20609.1.S1_at172WHE2AFFY
Ta.20609.1.S1_at139WHE2AFFY
DNA
tggttgcgtgatgagttgcgaactctttcatgcacatacaagtgccgtca
tgacgctgctgctgatttgattcacatgtatgcttacacaaagtgtttct
tcagagcccgagactacaagaccgttaagtctccaccagttcatatcagt
gcgggggatttangtcccaaatatgctgataaactgggaccangtttggg
aggaggacagcaagacgtacccagagaactattgcttagcacagcttatc
tattggtacagccagaatgcagaacccgaatctagactgacaagagctag
aaagggttgtatgtcactaccagatgtgtcctctttctatgtaaagtctg
taaagccaactcaagagcgagtttatggcaccagaactgtgagattcatg
ctatcacggatggagaaacaggcccaacgtccatggccgaacgaccggat
atgggtgttcaagagcgacccaagattctttggcactccaatgatggatg
ctgtgctgaataacaatt

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