GrainGenes Sequence Report: BG262472
Sequence
BG262472
Contig
Ta.27712.1.S1_at Ta.27777.1.S2_s_at NSFT03P2_Contig18375
Tracefile
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External Databases
Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index
TC278904
wEST map position
BG262472
NCBI UniGene
Ta.27777
DB Remark
Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, strongly similar to NP_001056562.1 Os06g0106100 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
4AL 7DS
Clone Library
Wheat 5-15 DAP spike cDNA library
Tissue
Spike
Developmental Stage
Adult plant
Data Source
genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title
WHE0936_D06_H12ZS Wheat 5-15 DAP spike cDNA library Triticum aestivum cDNA clone WHE0936_D06_H12, mRNA sequence.
Other Name
WHE0936_D06_H12ZS [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA018E1X
Clone
WHE0936_D06_H12
Probe
WHE0936_D06_H12
Remark
DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes at 5, 10 and 15 DAP were harvested, total RNA and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors ). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes at 5, 10 and 15 DAP were harvested, total RNA and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.27712.1.S1_at 890 WHE2AFFY
[ Show all 20 ]
DNA
ctagccaccatgaaggtcttcatcctggctctccttgccctcgcagcaac
caccgccattgcccagttggaaaccacatgtagccagggctttggacaat
cccaacaacaacaacaacctggtcaacgacagttgctggagcagatgaag
ccgtgtgtggcattcctgcaacaaaagtgtagcccactgagaatgccatt
cctccagacacaagtcgagcaacttagcagctgccagatcgtgcaatacc
aatgctgccagcagttggcgcagatcccagagcgaacccggtgccatgcc
atccacatcgtggtagaggctatcattcaacaacaatcccaacaacaatg
gcaggagccccaacagcaagcacaacataagagcatgaggatgttgcttg
agaacctatcattgatgtgcaacatctacgtcccggtacaatgccagcag
caacaacaactggggcaacaacaacaacaacagttgcaggagcagttgac
accgtgcacgaca
GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: BG262472
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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture. | |||