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GrainGenes Sequence Report: BG273991

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Sequence	BG273991
Contig	NSFT03P2_Contig12238
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
wEST map position	BG273991
DB Remark	Locus Source: Aegilops speltoides
Keyword	EST
Species	Aegilops speltoides
Cultivar	F2 from 2-12-4-8-1-1-1-(1) x PI36909-12-811-(1 ) F2 from 2-12-4-8-1-1-1-(1) x PI36909-12-811-(1)
Chromosome	4BL 4DL
Clone Library	Aegilops speltoides anther cDNA library
Tissue	Anther
Developmental Stage	Premeiotic anthers
Data Source	genbank Release 135, Apr 15 2003 genbank Downloaded 2008-2009
Title	WHE2232_B05_D10ZS Aegilops speltoides anther cDNA library Aegilops speltoides cDNA clone WHE2232_B05_D10, mRNA sequence.
Other Name	WHE2232_B05_D10ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli SOLR
DNA Library	AS040E1X
Clone	WHE2232_B05_D10
Probe	WHE2232_B05_D10
Remark	DB_xref: taxon:4573 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in a growth chamber at the University of California, Davis (Akhunov). Premeiotic anthers were harvested, total RNA and poly(A) RNA were prepared, from each tissue and then pooled, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Akhunov, Chin, Choi, Close, Fenton, Kianian, Otto, Simons , Zhang) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in a growth chamber at the University of California, Davis (Akhunov). Premeiotic anthers were harvested, total RNA and poly(A) RNA were prepared, from each tissue and then pooled, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Akhunov, Chin, Choi, Close, Fenton, Kianian, Otto, Simons, Zhang) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	Ta.22725.1.S1_at 928 WHE2AFFY TaAffx.8022.1.S1_s_at 569 WHE2AFFY TaAffx.8022.1.S1_at 569 WHE2AFFY TaAffx.8022.2.S1_at 333 WHE2AFFY TaAffx.8022.2.S1_at 62 WHE2AFFY
DNA	ccccggtaaattatttaccacggaaaagctaattatgaccacaaagttga ttcaggaagttttccctgctataccagcaagagttctcagagcacaagct gtatcagcttatgaaagtgctacatacaatatcgcaatgttcactctagg agatacatgcatcatctcatcagatgactctcgcgctcttgcagataatg aaaataacccatctgaacaaagaacaagtgccaagcaaatggaagacaag ttatcaaaggttgtggaagtctttgttggaagaatcaggaaaatggaaaa cgactatctgagcttgagcaagagggcttcgatgctagatgtgcatctgg agtgccaggacttggaaaggatttcaatcgtaaatcgtctgggaagattc catggccgaaaccatgcagctggtgtcgaggcctcatctggctcacaaat ggtttctcgcagaattttccctgatagacatgtaatgtctttctctgtgc caggaaatcttcctgaagaggtgcactgtttggcactct

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