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GrainGenes Sequence Report: BG314119

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Sequence	BG314119
Contig	TaAffx.100035.1.S1_at NSFT03P2_Contig507
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
wEST map position	BG314119
DB Remark	Locus Source: Triticum monococcum
Keyword	EST
Germplasm	T. monococcum ssp. monococcum DV92
Species	Triticum monococcum
Cultivar	DV92
Chromosome	5AS 5BS 5DS
Clone Library	Triticum monococcum early reproductive apex cDNA library
Tissue	Early reproductive apex
Developmental Stage	Seven week-old plants
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE2459_D06_G11ZS Triticum monococcum early reproductive apex cDNA library Triticum monococcum cDNA clone WHE2459_D06_G11, mRNA sequence.
Other Name	WHE2459_D06_G11ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli XLOLR
DNA Library	TM043E1X
Clone	WHE2459_D06_G11
Probe	WHE2459_D06_G11
Remark	DB_xref: taxon:4568 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; The tissue, total RNA, and poly(A) RNA were prepared from apex at double-ridge stage to terminal-spikelet stage during transition from vegetative state to flower state, a cDNA library was made, and the cDNA clones were in vivo excised at the University of California, Davis (V. Echenique, B. Stamova , J. Dubcovsky). Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; The tissue, total RNA, and poly(A) RNA were prepared from apex at double-ridge stage to terminal-spikelet stage during transition from vegetative state to flower state, a cDNA library was made, and the cDNA clones were in vivo excised at the University of California, Davis (V. Echenique, B. Stamova, J. Dubcovsky). Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	TaAffx.100035.1.S1_at 1265 WHE2AFFY TaAffx.100035.1.S1_at 246 WHE2AFFY TaAffx.100035.2.S1_at 100 WHE2AFFY
DNA	tggtaatggcagatagtgctgttcagatggctgaatcaggatgcaaatat atcgctgtgctaggtgttgacttcatgtcagaaaatgtccgtgcaatact tgatcaagcaggatttactcaggttggtgtttatagaatgtccagcgagc aaattggttgttccttggcagatgctgcttcaagttctgcttatacacat tttcttaagacggcatcaagatctcctccttctttacatgtcatttatat caatacctcactggaaacaaaagctcatactcatgaacttgttcctacga taacctgtacctcttccaatgttgttgcaactatactacaggcatttgcc gaaataccagatcttaatgtctggtatggtcctgattcctatatgggtgc gaacatagcagacctatttaagagaatgactatcatgtcagatgaagaga ttacagagatacatccagatcacaacaggaaaactataagttcattatta caacgtcttcattactatcagaatggtaactgtattgtgcatgatatgtt tggccatgaagttgtggagaaaataaaggaggaatactgtgatgcatttc taactgcacactttgaagtcccaggagaaatgttctctttgtcaatggaa gcaa

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