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GrainGenes Sequence Report: BG604419

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Sequence
BG604419
Contig
Ta.3455.1.S1_at
NSFT03P2_Contig9145
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC303241
wEST map position
BG604419
NCBI UniGene
Ta.54234
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, strongly similar to NP_001045858.1 Os02g0141300 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
7BL
7DL
Clone Library
Wheat vernalized crown cDNA library
Tissue
Crown tissue of seedling
Developmental Stage
Five-week old seedling
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0833_D01_G01ZS Wheat vernalized crown cDNA library Triticum aestivum cDNA clone WHE0833_D01_G01, mRNA sequence.
Strain
lab_host E. coli SOLR
Clone
WHE0833_D01_G01
Probe
WHE0833_D01_G01
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were germinated and grown at 4 C for 5 weeks. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.3455.1.S1_at632WHE2AFFY
DNA
gtgagtgaggctttggcgtacaagctgccatttgtatttgttcgtagaga
ttatttcaatgaagagccttttctgcggaatatgcttgagcattatcaat
gtggcggggagatgatacggagggatttacttactggacattggaaacct
tatgtgctacgtgctttaacacttaaaccctgctatgatcgtccaataaa
tggtggcgaggtggctgcacatatcctccaggatactgctgtcgggaaga
agtatatttccggcaagttgagcggggcaagacgattacgtgatgccata
gtgctaggataccaactacagagggctccggggagagatgtaggaattcc
tgaatggtattc

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