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GrainGenes Sequence Report: BG604678

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Sequence	BG604678
Contig	Ta.3324.1.S1_at NSFT03P2_Contig16347
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC312688
wEST map position	BG604678
NCBI UniGene	Ta.54278
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, strongly similar to NP_001055823.1 Os05g0473900 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Species	Triticum aestivum
Cultivar	Chinese Spring
Chromosome	4AL 4DS
Clone Library	Wheat 5-15 DAP spike cDNA library
Tissue	Spike
Developmental Stage	Adult plant
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE0942_G01_M02ZS Wheat 5-15 DAP spike cDNA library Triticum aestivum cDNA clone WHE0942_G01_M02, mRNA sequence.
Strain	lab_host E. coli SOLR
Clone	WHE0942_G01_M02
Probe	WHE0942_G01_M02
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes at 5, 10 and 15 DAP were harvested, total RNA and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors ). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes at 5, 10 and 15 DAP were harvested, total RNA and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	Ta.3324.1.S1_at 1043 WHE2AFFY Ta.3324.1.S1_at 56 WHE2AFFY
DNA	gcaaacagttccgcgccaccctcctccactggtcaatccccatcccctgt tccgttcatacatctacctccgccgccgccatgccgccggccggcagcct caccgccgaccagctcagcttcttcgagaagaacggctacctggtgctgg agtcgttctcgggcgcggaggaggttcaggcgatgcgggaccgcatggcc cagctcgtcgacggcttcgacggcgctgactccagtgtcttctccactaa ggatcatcggcagttgaaggacgactacttctttaagagtgcagagaata tatctttcttcttcgaggaaaaggcatttggagatgacgggtgcttgaga cagccaaaggaactttcaattaataaagttggacatgcactacatgaaca tgaccctgtgttcaaaaagtttgctttctcggagaatatttctagcctgt tctcttctttagggtacaagagacctgcagttattcaatctatgtacatc tttaagcaaccgggcattggtggcgagggtggtgccacaccaggataata cattcctttatacagagcctctatcatgcacaggattgtggcttgcactt gaagatgcaacaattaccaa

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