GrainGenes Sequence Report: BI949870

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Sequence

BI949870

External Databases

TIGR Gene Index

NCBI UniGene

DB Remark

Locus Source: Hordeum vulgare subsp. vulgare

UniGene title 'Transcribed locus, strongly similar to NP_565786.1 LHB1B2 (Photosystem II light harvesting complex gene 1.5); chlorophyll binding [Arabidopsis thaliana]'

Keyword

EST

Species

Hordeum vulgare subsp. vulgare

Cultivar

Morex

Clone Library

Hordeum vulgare spike EST library HVcDNA0012 (Fusarium infected)

Tissue

Spike

Data Source

genbank	Release 135, Apr 15 2003
genbank	Updated Nov 2006

Title

HVSMEl0016J12f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium infected) Hordeum vulgare subsp. vulgare cDNA clone HVSMEl0016J12f, mRNA sequence.

Strain

lab_host TJC121

vulgare

Clone

HVSMEl0016J12f

Probe

UMB001

Remark

DB_xref: taxon:112509

Feature: source: mol_type = 'mRNA';

Locus Comment: Contact: Wing RA; Clemson University Genomics Institute; Clemson University; 100 Jordan Hall, Clemson, SC 29634, USA; Tel: 864 656 7288; Fax: 864 656 4293; Email: rwing@clemson.edu; Total hq bases = 395; Seq primer: AATTAACCCTCACTAAAGGG; High quality sequence stop: 501.

Note: Vector: pBluescript SK(-); Site_1: EcoRI; Site_2: XhoI; Plants were grown at the University of Minnesota in the GJ Muehlbauer lab; spikes were harvested and snap frozen at 0, 1, 2, 3, 4, 5, 6, and 8 days after Fusarium graminearum inoculation (Heinen). In the TJ Close lab at the University of California, Riverside, total RNA was prepared from each sample pool, equal quantities of all eight RNA pools were combined, poly(A) RNA was purified from the mixture, one primary unamplified cDNA library was made, and 1 million pfu were in vivo excised to give pBluescript SK(-) cDNA phagemids (Choi, Fenton, Malatrasi ). Phagemids were plated and picked at the Clemson University Genomics Institute (CUGI) (Begum, Palmer, Frisch, Atkins and Wing). Plasmid DNA preparations, DNA sequencing and sequence analysis were performed at CUGI (Wing, Yu, Frisch, Henry, Simmons, Oates, Rambo, Main). The sequence has been trimmed to remove vector sequence and contains a minimum of 100 bases of phred value 20 or above. For more details on library preparation and sequence analysis see http:

Note: Vector: pBluescript SK(-); Site_1: EcoRI; Site_2: XhoI; Plants were grown at the University of Minnesota in the GJ Muehlbauer lab; spikes were harvested and snap frozen at 0, 1, 2, 3, 4, 5, 6, and 8 days after Fusarium graminearum inoculation (Heinen). In the TJ Close lab at the University of California, Riverside, total RNA was prepared from each sample pool, equal quantities of all eight RNA pools were combined, poly(A) RNA was purified from the mixture, one primary unamplified cDNA library was made, and 1 million pfu were in vivo excised to give pBluescript SK(-) cDNA phagemids (Choi, Fenton, Malatrasi). Phagemids were plated and picked at the Clemson University Genomics Institute (CUGI) (Begum, Palmer, Frisch, Atkins and Wing). Plasmid DNA preparations, DNA sequencing and sequence analysis were performed at CUGI (Wing, Yu, Frisch, Henry, Simmons, Oates, Rambo, Main). The sequence has been trimmed to remove vector sequence and contains a minimum of 100 bases of phred value 20 or above. For more details on library preparation and sequence analysis see http:

DNA

agatagtcgacccgctctaccccggcggcagcttcgaccccctgggcctc
gccgaggaccccgaggccttcgccgagctcaaggtgaaggagatcaagaa
cggccgcctcgccatgttctccatgttcggcttcttcgtccaggccatcg
tcaccggcaagggccccctcgagaacctcgccgaccacctcgccgacccc
gtcaacaacaacgcctgggctttcgccaccaacttcgttcccggcaagtg
agctcagtcagctcaacctctagcgcgcgcgcgcgcgcttggccgacaac
ttcattgctgatggatgctgctgtgctgcatgtctttccggactgataga
ttttgcatgtgagggcgagtcgagatgatgagttggtgtgtgtacactaa
aaagatggtgtttgtgtaatatctggttatttttcagattaatcaaggca
tctttcttcttccgcttaaaaaaaaaaagaaaatggaaaaacnaatataa
aaatntcctcgagccaggccgtcgtat


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