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GrainGenes Sequence Report: BM137384

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Sequence	BM137384
Contig	NSFT03P2_Contig1009
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC287720
wEST map position	BM137384
DB Remark	Locus Source: Triticum aestivum (bread wheat)
Keyword	EST
Species	Triticum aestivum
Cultivar	Sumai3
Chromosome	5AL 5DL 5DS
Clone Library	Wheat Fusarium graminearum infected spike cDNA library
Tissue	Spike
Developmental Stage	Adult plant
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE0463-0466_E07_E07ZS Wheat Fusarium graminearum infected spike cDNA library Triticum aestivum cDNA clone WHE0463-0466_E07_E07, mRNA sequence.
Strain	lab_host E. coli SOLR
Clone	WHE0463-0466_E07_E07
Probe	MAG4248
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequences have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20. No effort was taken; to identify ESTs of fungal origin from this library, thus this EST; could be of wheat or fungal origin.; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid pBluescript SK; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes were sprayed at anthesis with Fusarium graminearum. Total RNA, and poly(A) RNA were prepared and pooled from infected spike at 0, 6, 12, 24, 36 and 48 hours after inoculation, a cDNA library was made , and the cDNA clones were in vivo excised to give pBluescript phagemids in G. Muehlbauer lab at the University of Minnesota (Kruger, W.M., Muehlbauer, G.J., Pritsch, C., Vance, C.). The cDNA library should contain genes of both wheat and fungal pathogen origin. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda Uni-ZAP XR, excised phagemid pBluescript SK; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes were sprayed at anthesis with Fusarium graminearum. Total RNA, and poly(A) RNA were prepared and pooled from infected spike at 0, 6, 12, 24, 36 and 48 hours after inoculation, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in G. Muehlbauer lab at the University of Minnesota (Kruger, W.M., Muehlbauer, G.J., Pritsch, C., Vance, C.). The cDNA library should contain genes of both wheat and fungal pathogen origin. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	TaAffx.86413.2.S1_at 398 WHE2AFFY Ta.21281.1.S1_at 117 WHE2AFFY
DNA	acagaaggatataatcctgcaacatggatgctggaagttagctccccttc agccgaggctcgcctgaacataaattttgctgacatttatgctaattctg acctttataggaaaaaccaagaacttattaaggaattaagcgttcccccg ccaggttacgaggatctctcatttcctacaaagtattctcagaatttcta caaccaatgtgttgcaaacttctggaagcaatacaaatcttattggaaga atccagctcacaacgccatgcgcttccttatgacgttgatctatgccctt gtatttggcacggttttttggcagaaggggacaaaaataaactcgcaaca agatttagccaatctacttggagccacttatgctgcggtctttttccttg ggtctgccaactgtatcacagttcagcctgttgtggcaattgagcgaaca gttttctaccgtgaaaaggcggcagggatgtactctccattagcctatgc attcactcagacatgcgtggaggtgatgtacaacatcgtgcaggggattg aatacacgttgatcatctattcgatgattggatatgaatggaaagctg

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