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GrainGenes Sequence Report: Ta.3324.1.S1_at

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Sequence
BQ168444
Contig
Ta.3324.1.S1_at
NSFT03P2_Contig16347
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC312688
wEST map position
BQ168444
NCBI UniGene
Ta.54278
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, strongly similar to NP_001055823.1 Os05g0473900 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
4AL
Clone Library
Wheat salt-stressed crown cDNA library
Tissue
Crown
Developmental Stage
Adult plant
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE2108_A10_B20ZT Wheat salt-stressed crown cDNA library Triticum aestivum cDNA clone WHE2108_A10_B20, mRNA sequence.
Strain
lab_host E. coli SOLR
Clone
WHE2108_A10_B20
Probe
WHE2108_A10_B20
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; This EST was generated by sequencing from the 3' end of the clone.; Sequences have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20.; Seq primer: T7 primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown under hydroponic conditions at UC Davis, salt stressed for 12 hours, and for 7 days, then dissected and frozen (Akhunov in J Dvorak Lab). Total RNA and poly(A) RNA were prepared from crown tissue, equal portions of RNA were pooled from the two treatments, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab at the University of California, Riverside (Akhunov, Chin, Choi, Close, Fenton, Kianian, Otto, Simons, Zhang). Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA
ttttttttttttttttttttttttgaggaggaaattggtttatttcagga
ttgcagatagtaactgatatcatgacaacacaacagcaagtattcagtat
ttacatgtacacatgtgaaagacaacaaagaaaccagcattgctctgcgg
cgttcccaaatttcactgcaccgatgaaaagcaactgaaactgctagctg
acgatatcatgtttattagtaactggctgaactaagacacatagagcggt
tcaggcgcagttttcctttgtatccagttgtccttggaccatttacatcc
ttccatgtcaactacatgtaagctcagtgcatgtcttgacactggagaaa
ggttctcgaagctctgatgtacaagatcgccgtgaataacaacaaagtca
cctgatttcatttccagtggtacaaactctttctggtcataaagcgggga
gggtcgatcaaaatgagtaccattttcatctctgatcattcgccttttta
gaccatttttatgtgatccgggaattggccataggcaaccattggttatt
gttgcatcttcaagtgcaagccacaatcctgtac

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