Query (optional)   in Class  

GrainGenes Sequence Report: NSFT03P2_Contig10583

[Submit comment/correction]

Sequence
BQ171269
Contig
Ta.7661.1.S1_at
NSFT03P2_Contig10583
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC283921
wEST map position
BQ171269
NCBI UniGene
Ta.7661
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, moderately similar to NP_001043597.1 Os01g0620100 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Triticum aestivum
Cultivar
Chinese Spring
Clone Library
Wheat pre-anthesis spike cDNA library
Tissue
Spike before anthesis
Developmental Stage
Adult plant
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE2343_F10_L19ZT Wheat pre-anthesis spike cDNA library Triticum aestivum cDNA clone WHE2343_F10_L19, mRNA sequence.
Strain
lab_host E. coli SOLR
Clone
WHE2343_F10_L19
Probe
WHE2343_F10_L19
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; This EST was generated by sequencing from the 3' end of the clone.; Sequences have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20.; Seq primer: T7 primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Whole spike with awns trimmed, white, green and yellow anther were collected and total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA
ttttttttttttttttttttagactgtgaactgatttgttgacagttgaa
taaaataaattagtcagcaggctaaattgtttacaagagaacagatacat
tatcaactgtggaccatttttttcccatcacatggccataaagaacagct
acatcatcaaccagataaggataacaggtacatcatgcattcatggttga
ggagcctagttttgtcagggcaaagccaaccatgcatgcgctataccttc
cacacaagacaacataaagaaaccttgcagaattgtgaacagatagcaac
cacaatttgggatcctatcttcatgttgtagagctattaaggcatttaag
tttgctttgtgcctgcaatttgggatcctatttgttgtgaacagccctta
ctggtgtgacccattgcagtcaagcacagcctgctcatgccaaactccat
ttaagttggcttgccatagcctaaccatgccatccactccggtcgatgcg
agcgtcataccgcccatgtcccattccagttgccatacctccccattgtg
gctgggaagtacagcaacattctctgttgacagtctgccgtc

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.