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GrainGenes Sequence Report: BU976975

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Sequence
BU976975
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC175280
NCBI UniGene
Hv.5959
DB Remark
Locus Source: Hordeum vulgare subsp. vulgare
UniGene title 'Cultivar Caresse histone deacetylase HD2 isoform 1'
Keyword
EST
Species
Hordeum vulgare subsp. vulgare
Cultivar
barke
Clone Library
HA
Tissue
embryosac
Developmental Stage
0-7 DAP (days after pollination)
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
HA10K03u HA Hordeum vulgare subsp. vulgare cDNA clone HA10K03 3-PRIME, mRNA sequence.
Strain
lab_host XL10-Gold
vulgare
Clone
HA10K03
Probe
bags1p04
Remark
DB_xref: taxon:112509
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Stein Nils; Molecular Markers Group, Department Genbank; Institute of Plant Genetics and Crop Plant Research (IPK); Corrensstr. 3, 06466, Gatersleben, Germany; Tel: 039482-5522; Fax: 039482-5595; Email: stein@ipk-gatersleben.de; Insert Length: 554 Std Error: 0.00; Plate: 10 row: K column: 3; Seq primer: M13rev.
Note: Vector: pBluescript SK+; Site_1: EcoRI (5'-end of cDNA); Site_2: XhoI (3'-end of cDNA); 0-7 DAP(days after pollination) Due to a cloning artefact caused by the kit, in most cases the EcoRI site is NOT present, as well as the EcoRIadapter used for cloning. To excise the insert, restriction sites upstream EcoRI should be used (e.g. BamHI, SalI,PstI). NOTE: Also due to the cloning system used Blue/white selection for recombinats is not 100% reliable. Average insert size is 1 kb
DNA
gaatcccaaaacaccacatgattcattcattcaaagcttcatcatagcat
agcatagcataccaccaaccaattcaatttccgaaccacaacagcttcct
tcgattcgactcatcaatcactaacagatcaacggttttctcccttccct
caggctcaggctaggtagggaacacgacaacatagataatagataggtag
cctaaaacaccagcgtaactgatagtctcatagggcaagaacacatcaat
caaaatagtaactgactcaacccagccagccaaccaacatccccctctcc
tctcctctcctcttcacttggccgcgtgcttggccttggcgtgcgaagct
agagcaacctcgctgttgaatgtcttagtgcacgacttgcaggccaccga
ccctccagacttgggcgacttgtcgctggttgctggggtcttgcctacct
tcttggccgggtgcggggtcgcaacatggacagcccccttcttgtcacct
gttttctggcctgatggtgttgcaattttggccttcttgtcagcaacagg
ggtc

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