GrainGenes Sequence Report: BU987571
Sequence
BU987571
External Databases
Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index
TC165613
NCBI UniGene
Hv.9768
DB Remark
Locus Source: Hordeum vulgare subsp. vulgare UniGene title 'Transcribed locus, strongly similar to NP_001061138.1 Os08g0180300 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Hordeum vulgare subsp. vulgare
Cultivar
barke
Clone Library
HF
Tissue
caryopsis
Developmental Stage
developing caryopsis, 16-25 DAF (days after flowering)
Data Source
genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title
HF15C02r HF Hordeum vulgare subsp. vulgare cDNA clone HF15C02 5-PRIME, mRNA sequence.
Strain
lab_host XL10-Gold vulgare
Clone
HF15C02
Probe
GBR1485
Remark
DB_xref: taxon:112509 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Stein Nils; Molecular Markers Group, Department Genbank; Institute of Plant Genetics and Crop Plant Research (IPK); Corrensstr. 3, 06466, Gatersleben, Germany; Tel: 039482-5522; Fax: 039482-5595; Email: stein@ipk-gatersleben.de; Insert Length: 421 Std Error: 0.00; Plate: 15 row: C column: 2; Seq primer: M13rev. Note: Vector: pBluescript SK+; Site_1: EcoRI (5'-end of cDNA); Site_2: XhoI (3'-end of cDNA); developing caryopsis , 16-25 DAF(days after flowing) Due to a cloning artefact caused by the kit, in most cases the EcoRI site is NOT present, as well as the EcoRIadapter used for cloning. To excise the insert, restriction sites upstream EcoRI should be used (e.g. BamHI, SalI,PstI). NOTE: Also due to the cloning system used Blue/white selection for recombinats is not 100% reliable.Average insert size is 940 bp Note: Vector: pBluescript SK+; Site_1: EcoRI (5'-end of cDNA); Site_2: XhoI (3'-end of cDNA); developing caryopsis, 16-25 DAF(days after flowing) Due to a cloning artefact caused by the kit, in most cases the EcoRI site is NOT present, as well as the EcoRIadapter used for cloning. To excise the insert, restriction sites upstream EcoRI should be used (e.g. BamHI, SalI,PstI). NOTE: Also due to the cloning system used Blue/white selection for recombinats is not 100% reliable.Average insert size is 940 bp
DNA
ctcctccaagatacaagcgaccgtcgatatactgaattctatcattaaca
cacatgcccttacagatagtgataccatcgaatcaaatcgaagccgagta
tcccctgtgaaagccattgtcttttcacagtggactggcatgctggattt
gctggagttttcactgaacagcaatcttatacaatacaggagactagacg
gaacaatgtccctcaattcaagagataaagcagtgaaggattttaacact
gacccagaggttagagttatgattatgtcattgaaagcgggtaatcttgg
tctgaatatggttgctgcttgccatgtgatactccttgatctttggtgga
atccttatgctgaggatcaggcaattgatagagcacacaggattgggcag
actcgtcctgtcactgtctct
GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: BU987571
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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture. | |||