GrainGenes Sequence Report: BV211402

Sequence

BV211402

External Databases

Data at GenBank

Data at EMBL

Data at DDBJ

DB Remark

Locus Source: Triticum aestivum (bread wheat)

Keyword

STS

Species

Triticum aestivum

Clone Library

Wheat var Chinese Spring Genomic DNA

Data Source

genbank

Release 145, Dec 15 2004

Title

BARC335 Wheat var Chinese Spring Genomic DNA Triticum aestivum STS genomic, sequence tagged site.

Probe

BARC335

Remark

DB_xref: taxon:4565

Feature: primer_bind: On complementary strand.

Feature: source: mol_type = 'genomic DNA'

Locus Comment: Synonyms: XBARC335; Contact: Dr. Perry Cregan; Soybean Genomics Improvement Laboratory; United States Department of Agriculture; BARC-WEST, Bldg. 006, Rm 100, 10300 Baltimore Ave., MD 20705, USA; Tel: 301-504-5070; Fax: 301-504-5728; Email: creganp@ba.ars.usda.gov; Primer A: CGCCGCCCTCTTCTCCTTTGC; Primer B: CTCGCGGGAAACGGGACGGGAC; STS size: 216; PCR Profile:; Presoak: 95 degrees C for 3.0 minute(s); Denaturation: 95 degrees C for 45 second(s); Annealing: 65 degrees C for 45 second(s); Polymerization: 72 degrees C for 45 second(s); PCR Cycles: 35; Thermal Cycler: Perkin Elmer TC or MJ PTC-225 or MBS; Satellite 384; Protocol:; Template: 30-100 ng; Primer: each 1.5 uM; dNTPs: each 200 uM; Taq Polymerase: 0.05 units/ul; Total Vol: 10 ul; Buffer:; MgCl2: 2.5 mM; KCl: 50 mM; Tris-HCl: 10 mM; pH: 8.3.

Note: Vector: pBluescript; V-type: Plasmid; Genomic fragments cloned into pBluescript

EMBL Feature

primer_bind	198	218	Location: 198..218
primer_bind	392	413	Location: complement(392..413)
STS	198	413	Location: 198..413

DNA

cgccgcccggtccctcgtcgccgggtcgccgcgtctgccgcgaccgaacg
ccgccggccgccgcgcgcctccgcccggagctcgccccgccgcccgaagc
gcgcctccgccgcccgcgtccgacctcgccggaccccgccgcctagccac
cgccagccggaccacgcctcccgcacctccggtgagccgcccgacctcgc
cgccctcttctcctttgcctcacccggtctctctctctctaaccactctc
tctctctctccgccatggacgccggagccggagctcgccggagcttcgcc
ggagccagatctggtccgggtggatcagatccaccaggacgtgaaccaaa
cggcgccagcgccgccccaaaccactccgtcccgctagaccgtcccgtcc
cgtttcccgcgagggtaaaattccactaagtccccggatctgctacataa
ttatgccatgtttgacctgctatatctctgcatccgtagctccgttttgt
gcgtataatatgtcaaattgttcgtctcgacgagtacttcatttcattcc
attgcatcattttcatttgagctcatcttgatgcccgaaatgttgtttga
agagtgcatgttgatgttaatctgctgaaactgttataacttgctcattt
atcatttttgccatgattgatgtgtgcatcctatgaggttgatgtctaca
tgtatgttgatctatgacatgctatctttccaggggtgccaaccatgtat
ttttgtgagtt


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