GrainGenes Sequence Report: BV211408

Sequence

BV211408

External Databases

Data at GenBank

Data at EMBL

Data at DDBJ

DB Remark

Locus Source: Triticum aestivum (bread wheat)

Keyword

STS

Species

Triticum aestivum

Clone Library

Wheat var Chinese Spring Genomic DNA

Data Source

genbank

Release 145, Dec 15 2004

Title

BARC1126 Wheat var Chinese Spring Genomic DNA Triticum aestivum STS genomic, sequence tagged site.

Probe

BARC1126

Remark

DB_xref: taxon:4565

Feature: primer_bind: On complementary strand.

Feature: source: mol_type = 'genomic DNA'

Locus Comment: Synonyms: XBARC1126; Contact: Dr. Perry Cregan; Soybean Genomics Improvement Laboratory; United States Department of Agriculture; BARC-WEST, Bldg. 006, Rm 100, 10300 Baltimore Ave., MD 20705, USA; Tel: 301-504-5070; Fax: 301-504-5728; Email: creganp@ba.ars.usda.gov; Primer A: CTCTTTGAAATTCTCTTCTTTTCTTT; Primer B: CTTTCACGACCGAATGATGTGAATAA; STS size: 252; PCR Profile:; Presoak: 95 degrees C for 3.0 minute(s); Denaturation: 95 degrees C for 45 second(s); Annealing: 50 degrees C for 45 second(s); Polymerization: 72 degrees C for 45 second(s); PCR Cycles: 35; Thermal Cycler: Perkin Elmer TC or MJ PTC-225 or MBS; Satellite 384; Protocol:; Template: 30-100 ng; Primer: each 1.5 uM; dNTPs: each 200 uM; Taq Polymerase: 0.05 units/ul; Total Vol: 10 ul; Buffer:; MgCl2: 2.5 mM; KCl: 50 mM; Tris-HCl: 10 mM; pH: 8.3.

Note: Vector: pBluescript; V-type: Plasmid; Genomic fragments cloned into pBluescript

EMBL Feature

primer_bind	323	348	Location: 323..348
primer_bind	549	574	Location: complement(549..574)
STS	323	574	Location: 323..574

DNA

acattacattcatgcatcacacattcattccagttgtcggtgttcatcct
ttttcatagtataatccatgttagtttatttttcttgctttcttcttgtg
tgtttgaaaaactttgataaaatccaaaaatatttctcactttcttttta
gtttttctttctattttaagtagttcatagtattaaaagaaaacccaaat
atttctcgttcttcttttacttgttgggagctttcccgtgtaaatagtta
tctcactttcatttttttcttccatttcgctttcttgagaaaaacagaaa
ctccaaaaatattttagtgtgtctctttgaaattctcttcttttctttgg
gtcgtaaggagaagaccaccatgaaaatattgagtggctctcatatgcat
tattgttgatctgacaaagggccatattaccttgtcttctcctttgaata
aatgtttgtagattccagctttgtccacgacccgtgcactattattatta
ttattattattattattattattattattattattattattattattatt
attcacatcattcggtcgtgaaagtgaaaggcaataatgacgaaaattga
taaaatgattgagatgaagaaaagctagtatgaactcgacctattttatt
tttgtaaatatgattagctcattgctcttgattcaacctattatgaatga
aacatgtttgcaatgaaaattagagattatatttactcatgccatgct


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