GrainGenes Sequence Report: BV211417

Sequence

BV211417

External Databases

Data at GenBank

Data at EMBL

Data at DDBJ

DB Remark

Locus Source: Triticum aestivum (bread wheat)

Keyword

STS

Species

Triticum aestivum

Clone Library

Wheat var Chinese Spring Genomic DNA

Data Source

genbank

Release 145, Dec 15 2004

Title

BARC251 Wheat var Chinese Spring Genomic DNA Triticum aestivum STS genomic, sequence tagged site.

Probe

BARC251

Remark

DB_xref: taxon:4565

Feature: primer_bind: On complementary strand.

Feature: source: mol_type = 'genomic DNA'

Locus Comment: Synonyms: XBARC251; Contact: Dr. Perry Cregan; Soybean Genomics Improvement Laboratory; United States Department of Agriculture; BARC-WEST, Bldg. 006, Rm 100, 10300 Baltimore Ave., MD 20705, USA; Tel: 301-504-5070; Fax: 301-504-5728; Email: creganp@ba.ars.usda.gov; Primer A: CAATTACGCCAAAAACAAGTGC; Primer B: GTTTGTTTCGTGATGTTAAGTTCCA; STS size: 255; PCR Profile:; Presoak: 95 degrees C for 3.0 minute(s); Denaturation: 95 degrees C for 45 second(s); Annealing: 50 degrees C for 45 second(s); Polymerization: 72 degrees C for 45 second(s); PCR Cycles: 35; Thermal Cycler: Perkin Elmer TC or MJ PTC-225 or MBS; Satellite 384; Protocol:; Template: 30-100 ng; Primer: each 1.5 uM; dNTPs: each 200 uM; Taq Polymerase: 0.05 units/ul; Total Vol: 10 ul; Buffer:; MgCl2: 2.5 mM; KCl: 50 mM; Tris-HCl: 10 mM; pH: 8.3.

Note: Vector: pBluescript; V-type: Plasmid; Genomic fragments cloned into pBluescript

EMBL Feature

primer_bind	229	250	Location: 229..250
primer_bind	459	483	Location: complement(459..483)
STS	229	483	Location: 229..483

DNA

gaataattcaacatgtatttgaattgtatctataaattttttgacctgta
caggaaaaatgttcaatgtatattataaaatcaaaatgtacctgaaatag
aaaaaaacaaattgaagaagatgaagaaaaatggaagtgcatgaaaataa
cctgcaattgcacaaaataaaagtttaatgtcatgaagcaaaccaagaca
ataaaaaaaagtaaaaaaggtcaaagtacaattacgccaaaaacaagtgc
aattgcaaaaaaatgtctggtcaacaataaacatgaaactaacaaaatga
acaactgtaaataatagtagtagtagtagtagtagtagtagtagtagtag
tagtagtagtagtagtagtagtagtagtagtaataataataataataata
ataataataataataataaatgatttcaaagaagtggatcaaaattcaca
aaagtcaatggaacttaacatcacgaaacaaacaaaaacatgacaaaaac
tttgaaaatccaggcgtgcggattttagtaattctgatgtataatcatgc
acctataactacctataactatgtgctagttatcctaaaaaactatgtgc
tagttcatgttcactttttatttctttgccgatcgtgactcatgagcgtt
gatgacctcaggctcttatgggatgctctttctgtaatcaacttgacgta
gatcagagtgagatgcttagatctccgttgctcttgtacgtctgaccctg
atcggatcaggcaaaaccatctgacttgcttccccacggtgctatccatg
gttgtcattttgtcgcagaaaaaaaaactgtgcattacatagtatcgata
ccaataacatgcggacaaaggcacgaatcttatcttcccactagtgcaca
ggaaccttcccatccttcatctatttgattgatataggatgataatttgt
ag


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