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GrainGenes Sequence Report: CA010438

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Sequence
CA010438
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC172475
NCBI UniGene
Hv.1377
DB Remark
Locus Source: Hordeum vulgare subsp. vulgare
UniGene title 'Transcribed locus, moderately similar to NP_001057113.1 Os06g0210200 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Hordeum vulgare subsp. vulgare
Cultivar
barke
Clone Library
HT
Tissue
endosperm early
Developmental Stage
0-16 hours after imbibition
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
HT09N17u HT Hordeum vulgare subsp. vulgare cDNA clone HT09N17 3-PRIME, mRNA sequence.
Strain
lab_host XL10-Gold
vulgare
Clone
HT09N17
Probe
bags21m22
Remark
DB_xref: taxon:112509
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Stein Nils; Molecular Markers Group, Department Genbank; Institute of Plant Genetics and Crop Plant Research (IPK); Corrensstr. 3, 06466, Gatersleben, Germany; Tel: 039482-5522; Fax: 039482-5595; Email: stein@ipk-gatersleben.de; Insert Length: 536 Std Error: 0.00; Plate: 9 row: N column: 17; Seq primer: M13uni.
Note: Vector: pBluescript SK+; Site_1: EcoRI (5'-end of cDNA); Site_2: XhoI (3'-end of cDNA); Due to a cloning artefact caused by the kit, in most cases the EcoRI site is NOT present, as well as the EcoRIadapter used for cloning. To excise the insert, restriction sites upstream EcoRI should be used (e.g. BamHI, SalI,PstI). NOTE: Also due to the cloning system used Blue/white selection for recombinats is not 100% reliable.
DNA
atcaatccaacggtggactatacaaatcatcttgttatatacagtccgta
acttcgtatgtacatcacatacaaatcaacctgctgagatcgccgtcagc
agatttccattatttcagagaaagtttattctgactggatgagccctaac
cagtttatctgtggcttggagcatgatggttgtggcatcgcgggcatctg
aattagcttcgctacaattaatttacatgggatcgaaatacaataatgtt
acaacttatgtgcttatttcgaatcagcctttgaaggagctcagcgctct
gataagatgttgatacacttcgatgcccctcaggaacactttatcctcca
gaaactcgttatgatcgtgaagcaatattggagtatttatcattggagaa
aatccaagggctggaacacccatctgcctcacgaatcgggcgtccgtggt
tgaagataagatctctggctttgctagttttccacccgaagagatgatag
cctgttcaaacacagaccaccatgggtttgacgcat

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