Query (optional)   in Class  

GrainGenes Sequence Report: TaAffx.83813.1.S1_at

[Submit comment/correction]

Sequence
CA497255
Contig
TaAffx.83813.1.S1_at
NSFT03P2_Contig11964
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC297019
NCBI UniGene
Ta.1503
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, strongly similar to NP_001060120.1 Os07g0584500 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Triticum aestivum
Cultivar
Chinese Spring
Clone Library
Wheat meiotic anther cDNA library
Tissue
Anther
Developmental Stage
Meiotic stages pre-meiosis-metaphase I
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE3225_A06_A11ZT Wheat meiotic anther cDNA library Triticum aestivum cDNA clone WHE3225_A06_A11, mRNA sequence.
Strain
lab_host E. coli DH10B
Clone
WHE3225_A06_A11
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequences have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: T7 primer.
Note: Vector: pSPORT1; Site_1: SalI; Site_2: NotI; Plants were grown in a glasshouse. Anther meiotic stage was determined by removing anthers from individual primary florets. One anther was sacrificed for microscopic staging , and if determined to be between (and including) meiotic stages pre-meiosis and metaphase I, the remaining two anthers were collected and pooled for library construction. The tissue, total RNA, and poly(A) RNA were prepared, cDNA synthesised, and directionally ligated into pSPORT1 by Tim Sutton in the P Langridge Lab at the Department of Plant Science, University of Adelaide, Waite Campus, Australia. Average insert size 1.5Kb. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
Note: Vector: pSPORT1; Site_1: SalI; Site_2: NotI; Plants were grown in a glasshouse. Anther meiotic stage was determined by removing anthers from individual primary florets. One anther was sacrificed for microscopic staging, and if determined to be between (and including) meiotic stages pre-meiosis and metaphase I, the remaining two anthers were collected and pooled for library construction. The tissue, total RNA, and poly(A) RNA were prepared, cDNA synthesised, and directionally ligated into pSPORT1 by Tim Sutton in the P Langridge Lab at the Department of Plant Science, University of Adelaide, Waite Campus, Australia. Average insert size 1.5Kb. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA
ccacgcgtccggcgctgcacaagaacttccacgagcttaatggcaagatg
gttgaagtcaagagagctgtcccaaaggagcagtcgcctggacctgtcgc
acgctcacctgctggagggcagaaccttgctatcagcagggttcacaact
tcttgaatggcttcaaccagggatatagcccaaacccgataggaggttac
ggcatgagagtggatggaaggtttgggctgctttcaggtgcacgaaatgg
gttttcttcatttggccccagttatggaatgggcatgaatgttgaaactg
ggatgaatgcgaattttggtgcaaactctagtttcctcaataactcaaat
gggcggcaaatgggttcatactacaatggtggttcaaacagactaggcag
ccctattgggtatgttggtctgaatgacgattcaggatcaatattgagtt
caatgggaaggaatgtttggggtaatggaaatgtc

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.