GrainGenes Sequence Report: AL506997
Sequence
AL506997
External Databases
Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index
TC178038
NCBI UniGene
Hv.2101
DB Remark
Locus Source: Hordeum vulgare subsp. vulgare UniGene title 'Transcribed locus, moderately similar to NP_001060122.1 Os07g0585000 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Hordeum vulgare subsp. vulgare
Cultivar
barke
Clone Library
Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Tissue
developing caryopsis (3.-15.DAP)
Data Source
genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title
AL506997 Hordeum vulgare Barke developing caryopsis (3.-15.DAP) Hordeum vulgare subsp. vulgare cDNA clone HY04N17T 5', mRNA sequence.
Strain
lab_host XLOLR vulgare
Clone
HY04N17T
Probe
[Bcl1190ct1752cn5579] {SpCl-394}
Remark
DB_xref: taxon:112509 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Michalek W; Institute for Plant Genetics and Crop Plant Research; Corrensstr.3, D-06466 Gatersleben, Germany; Email: michalek@ipk-gatersleben.de, http: Note: Vector: plasmid pBK-CMV; Site_1: EcoRI; Site_2: XhoI; mRNA was made from developing caryopsis (3.-15.DAP) of spring barley variety 'Barke', a high quality malting variety. Cloning sites: EcoRI (5'-end of cDNA) and XhoI (3'-end of cDNA). NOTE: Due to a cloning artefact caused by the kit, in most cases the EcoRI site is NOT present, as well as the EcoRI adapter. Average insert size is 1 kb Sequence trimming: Vector sequences and sequence ends were trimmed from the 5'-and 3'-end until a 50 bp window contains less than two ambiguities. The maximum length was set to 700 bp
DNA
gctcgagcccctcccgactctcagcctcaccctgcccgctgctctctcct
ccgcgcctgattccagtggtgctgctgcttcttctcaaatctccaggaca
gaccagacacacacacagggacacaggttgcggagcagctagcggcggag
gtgctttcttcgtcatggagtcgcagcagcagcagcagcagatggaggcg
gtttctgcgccggccgccgctacgaacgggggcggggagctgatcgggta
cgtggacgtgcacgtgcggagcgcgcgggacattcagaacatctgcatct
accacaagcaggatgtgtacgcgcgcctgtcgctgccgggggagggcgcg
ccggcggcctccacgcaggtaatcaatggcggaggccgcaacccggtgtt
tgaccagtcggtgcgcgtcggcgtgcgcgcgggggacgtcgacgccgcgc
tccgctgcgaggtctggatgctcagccgggtcaagaattacctgcaggac
cagctgctggggttcgcgctcgtgccgctcccggacgtcgtcgccgccga
gggcggcacgctcgcgcgcgaattcccgctctccaccaacgacctcttcc
actccccggccggcttcttggagctcgagctctcttacatcgggggtcgt
gcccgatgtcattccccgtctcgcccacgcccaagccttgcgcttggccg

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: AL506997
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