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GrainGenes Sequence Report: AL507423

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Sequence	AL507423
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC160497
NCBI UniGene	Hv.18323
DB Remark	Locus Source: Hordeum vulgare subsp. vulgare UniGene title 'Transcribed locus, moderately similar to NP_001060671.1 Os07g0684800 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Species	Hordeum vulgare subsp. vulgare
Cultivar	barke
Clone Library	Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Tissue	developing caryopsis (3.-15.DAP)
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	AL507423 Hordeum vulgare Barke developing caryopsis (3.-15.DAP) Hordeum vulgare subsp. vulgare cDNA clone HY05J06V 5', mRNA sequence.
Strain	lab_host XLOLR vulgare
Clone	HY05J06V
Probe	[Bcl654ct1153cn4394] {SpCl-79} AL507423 GBM1011
Remark	DB_xref: taxon:112509 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Michalek W; Institute for Plant Genetics and Crop Plant Research; Corrensstr.3, D-06466 Gatersleben, Germany; Email: michalek@ipk-gatersleben.de, http: Note: Vector: plasmid pBK-CMV; Site_1: EcoRI; Site_2: XhoI; mRNA was made from developing caryopsis (3.-15.DAP) of spring barley variety 'Barke', a high quality malting variety. Cloning sites: EcoRI (5'-end of cDNA) and XhoI (3'-end of cDNA). NOTE: Due to a cloning artefact caused by the kit, in most cases the EcoRI site is NOT present, as well as the EcoRI adapter. Average insert size is 1 kb Sequence trimming: Vector sequences and sequence ends were trimmed from the 5'-and 3'-end until a 50 bp window contains less than two ambiguities. The maximum length was set to 700 bp
DNA	cgttnggatcaatcagaaagaaatcatctctcgacatatctagagctctt cttcttcttcttcttcttcctcctcctcctcagctcccgagctcatcctg agcatagcaaggcaagccatagccggaagatccggtcgagagggcgggac catgtcggacgtgacggaggtgatggatctgggggcggaggagccgcggc tgtcgctcccgccgggcttccggttccacccgaccgatgaggaggtggtc acccactacctcacccccaaggccgtcaacaactccttctcctgcctcgt gatcgccgacgtcgacctcaacaagaccgagccgtgggacctccccggga aggcgaagatgggggagaaggagtggtacttcttcgtgcacaaggaccgc aagtacccgacggggacgcgcaccaaccgggccacggagcgcggctactg gaaggcgacggggaaggacaaggagatcttccgcggcaagggccgggacg ccgtgctcgtcggcatgaagaagacgctcgtcttctacaccggccgcgcc ccccgcggcgataagacgccctacgtcatgcacgagtaccgcctcgaggg ccagctgccccaccgcctccaccggtcagccaagaacgattgggctgttt tgcccgggtgtttcgacaaaa

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