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GrainGenes Sequence Report: CB877685

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Sequence
CB877685
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC190032
NCBI UniGene
Hv.3945
DB Remark
Locus Source: Hordeum vulgare subsp. vulgare
UniGene title 'Transcribed locus, weakly similar to XP_002329607.1 predicted protein [Populus trichocarpa]'
Keyword
EST
Species
Hordeum vulgare subsp. vulgare
Cultivar
barke
Clone Library
HP
Tissue
epidermis
Developmental Stage
seedlings grown in greenhouse for 6 days
Data Source
genbankRelease 136, Jun 15 2003
genbankUpdated Nov 2006
Title
HP05N06T HP Hordeum vulgare subsp. vulgare cDNA clone HP05N06 5-PRIME, mRNA sequence.
Strain
lab_host XL10-Gold
vulgare
Clone
HP05N06
Probe
UMB602
Remark
DB_xref: taxon:112509
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Stein Nils; Molecular Markers Group, Department Genbank; Institute of Plant Genetics and Crop Plant Research (IPK); Corrensstr. 3, 06466, Gatersleben, Germany; Tel: 039482-5522; Fax: 039482-5595; Email: stein@ipk-gatersleben.de; Insert Length: 692 Std Error: 0.00; Plate: 5 row: N column: 6; Seq primer: T3.
Note: Vector: pBluescript SK+; Site_1: EcoRI (5'-end of cDNA); Site_2: XhoI (3'-end of cDNA); Due to a cloning artefact caused by the kit, in most cases the EcoRI site is NOT present, as well as the EcoRIadapter used for cloning. To excise the insert, restriction sites upstream EcoRI should be used (e.g. BamHI, SalI,PstI). NOTE: Also due to the cloning system used Blue/white selection for recombinats is not 100% reliable.Average insert size is 850 bp
DNA
cggcacgagggcctgctccgctatcggcgagctctcatgataccgtctcc
ccctacagcagcgtgtgcgcctccgcctcctttgcggccgcgccgttctg
cttcctcatctcccaagtctcctctcttctccatggaagaaacaacaagg
agaacgagaagatgtggtggtaataactctccctgactgatggatggaag
gattttatctgtggatggtaggtgtgtggatggatccggcggcaagcttt
gtccggatcagatcccggctccgttccgatcaaacccttccggtattttt
tcagaggaagggttgggggagcggagatccggcggtagggtttggtggtg
gttgctttaggttcacacgttgcttctgcacagctgtttggttcgccttg
atgtcattaggtaggttgttaattcttcggttaagggttggtcgcttgct
ggtgtagggatgatgatctggtaggtaaggagtgggtctcaggtttggtt
acagtggtaataatcgaagttcatgcgtgtgtgtgtgtgtgtgtgtgggt
gagttcaagattaaggttaaggtatgagttattaaggttaagggtacgag
ttatatatactgagagaagtatggtgtagttgcatctgcttgagctatgt
gtagttggtgtagcaactgagaagtgtctagttgcatcagct

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