Query (optional)   in Class  

GrainGenes Sequence Report: AL509839

[Submit comment/correction]

Sequence
AL509839
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC167781
NCBI UniGene
Hv.22636
DB Remark
Locus Source: Hordeum vulgare subsp. vulgare
UniGene title 'Transcribed locus, moderately similar to NP_001055835.1 Os05g0476200 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Species
Hordeum vulgare subsp. vulgare
Cultivar
barke
Clone Library
Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Tissue
developing caryopsis (3.-15.DAP)
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
AL509839 Hordeum vulgare Barke developing caryopsis (3.-15.DAP) Hordeum vulgare subsp. vulgare cDNA clone HY03A15u 3', mRNA sequence.
Strain
lab_host XLOLR
vulgare
Clone
HY03A15u
Probe
GBR643
Remark
DB_xref: taxon:112509
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Michalek W; Institute for Plant Genetics and Crop Plant Research; Corrensstr.3, D-06466 Gatersleben, Germany; Email: michalek@ipk-gatersleben.de, http:
Note: Vector: plasmid pBK-CMV; Site_1: EcoRI; Site_2: XhoI; mRNA was made from developing caryopsis (3.-15.DAP) of spring barley variety 'Barke', a high quality malting variety. Cloning sites: EcoRI (5'-end of cDNA) and XhoI (3'-end of cDNA). NOTE: Due to a cloning artefact caused by the kit, in most cases the EcoRI site is NOT present, as well as the EcoRI adapter. Average insert size is 1 kb Sequence trimming: Vector sequences and sequence ends were trimmed from the 5'-and 3'-end until a 50 bp window contains less than two ambiguities. The maximum length was set to 700 bp
DNA
ttttttttttttttttttaggtaagacggtacattacattaataaaaaaa
agtaccatcaaatttaaacccgactgataaaatcaagatacaaagtacat
caacagacagctcggctccagattaatagtttccacgaaacctcacggag
ttcagacaacccggagaacagatcaggacaaagcatgccacaatcagctt
gtccaatgtcgaaccatgttgcgattagatgatgcggacaatgccatccc
gaatcattatcctgtttgcatcttgcatcctctccaggatgaactctact
tgtcctctagtgtaagcaacagctgcatctctgttgactgtttgctcaac
ttcatcaatggacatttgatcaacatgatttgcaagcacatgctgtccaa
naatcncctcaaatgcttccattctctgtgaagaaacatcctgatcattt
gatgcattgcctgagcctccatccacatccattgggtcgttgccaggagc
ttccatgggcgtcggcattgccaccacttgctcctccagggcccatctac
aattatcaccacnctgcacctgcatcttggttgttttctcaaggtctctc
ctcctgctccaacgggtccttcccaatggtcaggtcaaantttcccttaa
nggggaataattttggccaaaaaatttcaagccttttttgggcttcca

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.