No. words: 1895; after pruning: 1855


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 19.3 (1,1:934)  894  0.00 0.11 0.11  KSU050_G01_BE438226Tu02P009G01G071F1_003.ab1        2   926 (4)  C KSU051_G01_BE438226Tu02P009G01G071R1_003.ab1   (31)   934    10 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  456 nodes

 230 str. conn. components

Path
    1  C KSU051_G01_BE438226Tu02P009G01G071R1_003.ab1   965 
   42    KSU050_G01_BE438226Tu02P009G01G071F1_003.ab1    11 
  102  C KSU051_G01_BE438226Tu02P009G01G071R1_003.ab1   864 
  116    KSU050_G01_BE438226Tu02P009G01G071F1_003.ab1    86 
  272  C KSU051_G01_BE438226Tu02P009G01G071R1_003.ab1   694 
  280    KSU050_G01_BE438226Tu02P009G01G071F1_003.ab1   250 
  464  C KSU051_G01_BE438226Tu02P009G01G071R1_003.ab1   502 
  728    KSU050_G01_BE438226Tu02P009G01G071F1_003.ab1   698 
  736  C KSU051_G01_BE438226Tu02P009G01G071R1_003.ab1   230 
  744    KSU050_G01_BE438226Tu02P009G01G071F1_003.ab1   714 
  764  C KSU051_G01_BE438226Tu02P009G01G071R1_003.ab1   202 
Contig length: old 965, new 965

Contig length: old 965, new 965
New start: 0