No. words: 1489; after pruning: 1463


Histogram of relative pair offsets, for read pairs with multiple alignments:
44     2
46     2
90     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 5.2 (1,1:588)  556  0.17 0.00 0.34  KSU043_A07_BE443500Ld01P009D02D081F2_063.ab1        8   590 (169)  C KSU044_A07_BE443500Ld01P009D02D081R2_063.ab1   (149)   581     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C KSU044_A07_BE443500Ld01P009D02D081R2_063.ab1   730 
  181    KSU043_A07_BE443500Ld01P009D02D081F2_063.ab1    39 
  185  C KSU044_A07_BE443500Ld01P009D02D081R2_063.ab1   546 
  193    KSU043_A07_BE443500Ld01P009D02D081F2_063.ab1    51 
  234  C KSU044_A07_BE443500Ld01P009D02D081R2_063.ab1   497 
  486    KSU043_A07_BE443500Ld01P009D02D081F2_063.ab1   344 
Contig length: old 900, new 901

Contig length: old 901, new 901
New start: 0