No. words: 1096; after pruning: 1070


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 6.1 (1,1:374)  367  0.00 0.00 0.27  KSU022_A08_BE443537Ld09P009E02E081F1_064.ab1        1   374 (154)  C KSU023_A08_BE443537Ld09P009E02E081R1_064.ab1   (194)   374     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  186 nodes

 95 str. conn. components

Path
    1  C KSU023_A08_BE443537Ld09P009E02E081R1_064.ab1   568 
  202    KSU022_A08_BE443537Ld09P009E02E081F1_064.ab1     8 
  206  C KSU023_A08_BE443537Ld09P009E02E081R1_064.ab1   363 
  318    KSU022_A08_BE443537Ld09P009E02E081F1_064.ab1   124 
  350  C KSU023_A08_BE443537Ld09P009E02E081R1_064.ab1   219 
  358    KSU022_A08_BE443537Ld09P009E02E081F1_064.ab1   164 
  454  C KSU023_A08_BE443537Ld09P009E02E081R1_064.ab1   115 
  470    KSU022_A08_BE443537Ld09P009E02E081F1_064.ab1   276 
  506  C KSU023_A08_BE443537Ld09P009E02E081R1_064.ab1    63 
  518    KSU022_A08_BE443537Ld09P009E02E081F1_064.ab1   324 
  526  C KSU023_A08_BE443537Ld09P009E02E081R1_064.ab1    43 
  530    KSU022_A08_BE443537Ld09P009E02E081F1_064.ab1   336 
Contig length: old 721, new 722

Contig length: old 722, new 722
New start: 0