No. words: 1301; after pruning: 1275


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:500)  483  0.00 0.20 0.00  KSU045_C01_BE446161Ld05P006E02E081F2_011.ab1        1   501 (129)  C KSU046_C01_BE446161Ld05P006E02E081R2_011.ab1   (169)   502     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C KSU046_C01_BE446161Ld05P006E02E081R2_011.ab1   671 
  547    KSU045_C01_BE446161Ld05P006E02E081F2_011.ab1   377 
  555  C KSU046_C01_BE446161Ld05P006E02E081R2_011.ab1   117 
  567    KSU045_C01_BE446161Ld05P006E02E081F2_011.ab1   397 
  575  C KSU046_C01_BE446161Ld05P006E02E081R2_011.ab1    97 
  591    KSU045_C01_BE446161Ld05P006E02E081F2_011.ab1   421 
  615  C KSU046_C01_BE446161Ld05P006E02E081R2_011.ab1    57 
  619    KSU045_C01_BE446161Ld05P006E02E081F2_011.ab1   449 
  627  C KSU046_C01_BE446161Ld05P006E02E081R2_011.ab1    45 
  635    KSU045_C01_BE446161Ld05P006E02E081F2_011.ab1   465 
Contig length: old 800, new 800

Contig length: old 800, new 800
New start: 0