No. words: 1306; after pruning: 1280


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.2 (1,1:501)  484  0.20 0.00 0.00  KSU045_E02_BE446161Ld16P006E02E081F2_008.ab1        1   501 (131)  C KSU046_E02_BE446161Ld16P006E02E081R2_008.ab1   (172)   502     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C KSU046_E02_BE446161Ld16P006E02E081R2_008.ab1   674 
  519    KSU045_E02_BE446161Ld16P006E02E081F2_008.ab1   347 
  523  C KSU046_E02_BE446161Ld16P006E02E081R2_008.ab1   152 
  543    KSU045_E02_BE446161Ld16P006E02E081F2_008.ab1   371 
  555  C KSU046_E02_BE446161Ld16P006E02E081R2_008.ab1   120 
  567    KSU045_E02_BE446161Ld16P006E02E081F2_008.ab1   395 
  579  C KSU046_E02_BE446161Ld16P006E02E081R2_008.ab1    96 
  595    KSU045_E02_BE446161Ld16P006E02E081F2_008.ab1   423 
Contig length: old 804, new 804

Contig length: old 804, new 804
New start: 0