No. words: 529; after pruning: 503


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -1.2 -1.2 (1,1:97)   83  0.00 2.06 0.00  KSU047_B04_BE496999Ld10P006H02H081F1_030.ab1        1    97 (167)  C KSU048_B04_BE496999Ld10P006H02H081R1_030.ab1   (166)    99     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.2       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  44 nodes

 24 str. conn. components

Path
    1  C KSU048_B04_BE496999Ld10P006H02H081R1_030.ab1   265 
  225    KSU047_B04_BE496999Ld10P006H02H081F1_030.ab1    57 
Contig length: old 431, new 432

Contig length: old 432, new 432
New start: 0