No. words: 529; after pruning: 503


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    4   -1.4 -1.4 (1,1:110)   94  0.00 0.93 0.93  KSU047_E04_BE496999Ld13P006H02H081F1_024.ab1        5   111 (139)  C KSU048_E04_BE496999Ld13P006H02H081R1_024.ab1   (172)   107     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.4       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  48 nodes

 26 str. conn. components

Path
    1  C KSU048_E04_BE496999Ld13P006H02H081R1_024.ab1   279 
  223    KSU047_E04_BE496999Ld13P006H02H081F1_024.ab1    54 
Contig length: old 418, new 419

Contig length: old 419, new 419
New start: 0