No. words: 968; after pruning: 942


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:447)  442  0.00 0.00 0.00  KSU002_C02_BE497108At01P006A03A091F1_006.ab1        1   448 (36)  C KSU003_C02_BE497108At01P006A03A091R1_006.ab1   (36)   448     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C KSU003_C02_BE497108At01P006A03A091R1_006.ab1   484 
   56    KSU002_C02_BE497108At01P006A03A091F1_006.ab1    20 
   68  C KSU003_C02_BE497108At01P006A03A091R1_006.ab1   417 
  100    KSU002_C02_BE497108At01P006A03A091F1_006.ab1    64 
  112  C KSU003_C02_BE497108At01P006A03A091R1_006.ab1   373 
  184    KSU002_C02_BE497108At01P006A03A091F1_006.ab1   148 
  276  C KSU003_C02_BE497108At01P006A03A091R1_006.ab1   209 
  308    KSU002_C02_BE497108At01P006A03A091F1_006.ab1   272 
  412  C KSU003_C02_BE497108At01P006A03A091R1_006.ab1    73 
  440    KSU002_C02_BE497108At01P006A03A091F1_006.ab1   404 
  456  C KSU003_C02_BE497108At01P006A03A091R1_006.ab1    29 
  460    KSU002_C02_BE497108At01P006A03A091F1_006.ab1   424 
Contig length: old 520, new 520

Contig length: old 520, new 520
New start: 0