No. words: 2160; after pruning: 2108


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     8

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 7.3 (1,1:451)  439  0.00 0.00 0.22  KSU045_G09_BE497108Ld03P006A03A091F2_067.ab1        1   450 (138)  C KSU046_G09_BE497108Ld03P006A03A091R2_067.ab1   (170)   451     3 *
Merge:(0)    1    0.0 4.8 (1,1:319)  303  0.00 0.63 0.31  KSU047_C05_BE497108Ld03P006A03A091F1_043.ab1        1   319 (143)  C KSU048_C05_BE497108Ld03P006A03A091R1_043.ab1   (168)   321     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 1       1        0
 2       1        0

Offset
  0       1 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  152 nodes

 78 str. conn. components

Path
    1  C KSU048_C05_BE497108Ld03P006A03A091R1_043.ab1   489 
  325    KSU047_C05_BE497108Ld03P006A03A091F1_043.ab1   155 
  333  C KSU048_C05_BE497108Ld03P006A03A091R1_043.ab1   157 
  377    KSU047_C05_BE497108Ld03P006A03A091F1_043.ab1   207 
Contig length: old 631, new 632

Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C KSU046_G09_BE497108Ld03P006A03A091R2_067.ab1   621 
  254    KSU045_G09_BE497108Ld03P006A03A091F2_067.ab1    84 
  274  C KSU046_G09_BE497108Ld03P006A03A091R2_067.ab1   348 
  446    KSU045_G09_BE497108Ld03P006A03A091F2_067.ab1   276 
  518  C KSU046_G09_BE497108Ld03P006A03A091R2_067.ab1   104 
  542    KSU045_G09_BE497108Ld03P006A03A091F2_067.ab1   372 
Contig length: old 757, new 758

Contig length: old 632, new 632
New start: 0 

Contig length: old 758, new 758
New start: 0