No. words: 1132; after pruning: 1092


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:551)  532  0.18 0.36 0.18  KSU006_G01_BE497160Tu02P006C03C091F1_004.ab1        1   552 (15)  C KSU007_G01_BE497160Tu02P006C03C091R1_004.ab1   (12)   553     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C KSU007_G01_BE497160Tu02P006C03C091R1_004.ab1   565 
   70    KSU006_G01_BE497160Tu02P006C03C091F1_004.ab1    56 
   74  C KSU007_G01_BE497160Tu02P006C03C091R1_004.ab1   492 
   94    KSU006_G01_BE497160Tu02P006C03C091F1_004.ab1    80 
  114  C KSU007_G01_BE497160Tu02P006C03C091R1_004.ab1   452 
  122    KSU006_G01_BE497160Tu02P006C03C091F1_004.ab1   108 
  126  C KSU007_G01_BE497160Tu02P006C03C091R1_004.ab1   440 
  130    KSU006_G01_BE497160Tu02P006C03C091F1_004.ab1   116 
  146  C KSU007_G01_BE497160Tu02P006C03C091R1_004.ab1   420 
  166    KSU006_G01_BE497160Tu02P006C03C091F1_004.ab1   152 
  174  C KSU007_G01_BE497160Tu02P006C03C091R1_004.ab1   392 
  190    KSU006_G01_BE497160Tu02P006C03C091F1_004.ab1   176 
  194  C KSU007_G01_BE497160Tu02P006C03C091R1_004.ab1   372 
  202    KSU006_G01_BE497160Tu02P006C03C091F1_004.ab1   188 
  214  C KSU007_G01_BE497160Tu02P006C03C091R1_004.ab1   352 
  222    KSU006_G01_BE497160Tu02P006C03C091F1_004.ab1   208 
  230  C KSU007_G01_BE497160Tu02P006C03C091R1_004.ab1   336 
  238    KSU006_G01_BE497160Tu02P006C03C091F1_004.ab1   224 
  254  C KSU007_G01_BE497160Tu02P006C03C091R1_004.ab1   312 
  270    KSU006_G01_BE497160Tu02P006C03C091F1_004.ab1   256 
  286  C KSU007_G01_BE497160Tu02P006C03C091R1_004.ab1   280 
  306    KSU006_G01_BE497160Tu02P006C03C091F1_004.ab1   292 
  330  C KSU007_G01_BE497160Tu02P006C03C091R1_004.ab1   236 
  338    KSU006_G01_BE497160Tu02P006C03C091F1_004.ab1   324 
  350  C KSU007_G01_BE497160Tu02P006C03C091R1_004.ab1   216 
  366    KSU006_G01_BE497160Tu02P006C03C091F1_004.ab1   352 
  422  C KSU007_G01_BE497160Tu02P006C03C091R1_004.ab1   144 
  430    KSU006_G01_BE497160Tu02P006C03C091F1_004.ab1   416 
  450  C KSU007_G01_BE497160Tu02P006C03C091R1_004.ab1   116 
  454    KSU006_G01_BE497160Tu02P006C03C091F1_004.ab1   440 
  474  C KSU007_G01_BE497160Tu02P006C03C091R1_004.ab1    92 
  504    KSU006_G01_BE497160Tu02P006C03C091F1_004.ab1   490 
  524  C KSU007_G01_BE497160Tu02P006C03C091R1_004.ab1    42 
  528    KSU006_G01_BE497160Tu02P006C03C091F1_004.ab1   514 
Contig length: old 580, new 581

Contig length: old 581, new 581
New start: 0