No. words: 680; after pruning: 654


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)   80   -3.3 -3.3 (1,1:276)  168  2.16 0.00 0.00  KSU004_H03_BE497635As01P006H03H091F1_028.ab1       13   197 (127)  C KSU005_H03_BE497635As01P006H03H091R1_028.ab1   (91)   265    81 *
  Worst pair: offset 0 
LLR breakdown: discreps: -0.7 (<20 part: -0.7 (#=4), >20:0.0 (#=0); in HQ: -0.7, out HQ 0.0), match: 4.0  trail: -5.9  lead: -0.8  total: -3.4  168  2.16 0.00 0.00  KSU004_H03_BE497635As01P006H03H091F1_028.ab1       13   197 (127)  C KSU005_H03_BE497635As01P006H03H091R1_028.ab1   (91)   265    81 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.3       1        0

Gap   # merges  # failures
 size
80       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  82 nodes

 43 str. conn. components

Path
    1  C KSU005_H03_BE497635As01P006H03H091R1_028.ab1   356 
  124    KSU004_H03_BE497635As01P006H03H091F1_028.ab1    45 
  128  C KSU005_H03_BE497635As01P006H03H091R1_028.ab1   229 
  136    KSU004_H03_BE497635As01P006H03H091F1_028.ab1    57 
  144  C KSU005_H03_BE497635As01P006H03H091R1_028.ab1   213 
  152    KSU004_H03_BE497635As01P006H03H091F1_028.ab1    73 
  156  C KSU005_H03_BE497635As01P006H03H091R1_028.ab1   201 
  164    KSU004_H03_BE497635As01P006H03H091F1_028.ab1    85 
  184  C KSU005_H03_BE497635As01P006H03H091R1_028.ab1   173 
  188    KSU004_H03_BE497635As01P006H03H091F1_028.ab1   109 
Contig length: old 403, new 403

Contig length: old 403, new 403
New start: 0