No. words: 388; after pruning: 362


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 0.5 (1,1:201)  102  4.96 0.00 0.00  KSU002_C03_BE591150At01P006A05A111F1_018.ab1        1   121 (0)  C KSU003_C03_BE591150At01P006A05A111R1_018.ab1   (65)   202    82 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  44 nodes

 24 str. conn. components

Path
    1  C KSU003_C03_BE591150At01P006A05A111R1_018.ab1   267 
   69    KSU002_C03_BE591150At01P006A05A111F1_018.ab1     4 
   73  C KSU003_C03_BE591150At01P006A05A111R1_018.ab1   195 
   77    KSU002_C03_BE591150At01P006A05A111F1_018.ab1    12 
   89  C KSU003_C03_BE591150At01P006A05A111R1_018.ab1   179 
   93    KSU002_C03_BE591150At01P006A05A111F1_018.ab1    28 
   97  C KSU003_C03_BE591150At01P006A05A111R1_018.ab1   171 
  115    KSU002_C03_BE591150At01P006A05A111F1_018.ab1    50 
  123  C KSU003_C03_BE591150At01P006A05A111R1_018.ab1   145 
Contig length: old 267, new 267

Contig length: old 267, new 267
New start: 0 
S Change at: 103; seg lengths: entry 1, contig 1