No. words: 1398; after pruning: 1372


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.5 (1,1:671)  648  0.15 0.00 0.00  KSU006_C07_BE637255As01P009A04A101F1_050.ab1        1   672 (18)  C KSU007_C07_BE637255As01P009A04A101R1_050.ab1   (36)   672     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  336 nodes

 170 str. conn. components

Path
    1  C KSU007_C07_BE637255As01P009A04A101R1_050.ab1   708 
   53    KSU006_C07_BE637255As01P009A04A101F1_050.ab1    17 
  141  C KSU007_C07_BE637255As01P009A04A101R1_050.ab1   568 
  145    KSU006_C07_BE637255As01P009A04A101F1_050.ab1   109 
  173  C KSU007_C07_BE637255As01P009A04A101R1_050.ab1   536 
  177    KSU006_C07_BE637255As01P009A04A101F1_050.ab1   141 
  193  C KSU007_C07_BE637255As01P009A04A101R1_050.ab1   516 
  197    KSU006_C07_BE637255As01P009A04A101F1_050.ab1   161 
  225  C KSU007_C07_BE637255As01P009A04A101R1_050.ab1   484 
  229    KSU006_C07_BE637255As01P009A04A101F1_050.ab1   193 
  249  C KSU007_C07_BE637255As01P009A04A101R1_050.ab1   460 
  261    KSU006_C07_BE637255As01P009A04A101F1_050.ab1   225 
  269  C KSU007_C07_BE637255As01P009A04A101R1_050.ab1   440 
  273    KSU006_C07_BE637255As01P009A04A101F1_050.ab1   237 
  389  C KSU007_C07_BE637255As01P009A04A101R1_050.ab1   320 
  397    KSU006_C07_BE637255As01P009A04A101F1_050.ab1   361 
  405  C KSU007_C07_BE637255As01P009A04A101R1_050.ab1   304 
  417    KSU006_C07_BE637255As01P009A04A101F1_050.ab1   381 
  429  C KSU007_C07_BE637255As01P009A04A101R1_050.ab1   280 
  449    KSU006_C07_BE637255As01P009A04A101F1_050.ab1   413 
  453  C KSU007_C07_BE637255As01P009A04A101R1_050.ab1   256 
  461    KSU006_C07_BE637255As01P009A04A101F1_050.ab1   425 
  465  C KSU007_C07_BE637255As01P009A04A101R1_050.ab1   244 
  557    KSU006_C07_BE637255As01P009A04A101F1_050.ab1   521 
  565  C KSU007_C07_BE637255As01P009A04A101R1_050.ab1   144 
  681    KSU006_C07_BE637255As01P009A04A101F1_050.ab1   645 
Contig length: old 726, new 726

Contig length: old 726, new 726
New start: 0