No. words: 781; after pruning: 755


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.4 (1,1:339)  326  0.29 0.00 0.00  KSU008_D01_BF473854Tu01P009A05A111F1_010.ab1        1   340 (44)  C KSU009_D01_BF473854Tu01P009A05A111R1_010.ab1   (57)   340     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  170 nodes

 87 str. conn. components

Path
    1  C KSU009_D01_BF473854Tu01P009A05A111R1_010.ab1   397 
  165    KSU008_D01_BF473854Tu01P009A05A111F1_010.ab1   108 
  169  C KSU009_D01_BF473854Tu01P009A05A111R1_010.ab1   229 
  229    KSU008_D01_BF473854Tu01P009A05A111F1_010.ab1   172 
  245  C KSU009_D01_BF473854Tu01P009A05A111R1_010.ab1   153 
  249    KSU008_D01_BF473854Tu01P009A05A111F1_010.ab1   192 
  253  C KSU009_D01_BF473854Tu01P009A05A111R1_010.ab1   145 
  257    KSU008_D01_BF473854Tu01P009A05A111F1_010.ab1   200 
  273  C KSU009_D01_BF473854Tu01P009A05A111R1_010.ab1   125 
  277    KSU008_D01_BF473854Tu01P009A05A111F1_010.ab1   220 
  305  C KSU009_D01_BF473854Tu01P009A05A111R1_010.ab1    93 
  317    KSU008_D01_BF473854Tu01P009A05A111F1_010.ab1   260 
Contig length: old 441, new 441

Contig length: old 441, new 441
New start: 0