No. words: 1806; after pruning: 1766


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 17.0 (1,1:844)  795  0.59 0.12 0.12  KSU016_F06_BF478571Ld14P006G05G111F1_038.ab1        4   845 (100)  C KSU017_F06_BF478571Ld14P006G05G111R1_038.ab1   (19)   842     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  402 nodes

 203 str. conn. components

Path
    1  C KSU017_F06_BF478571Ld14P006G05G111R1_038.ab1   861 
   35    KSU016_F06_BF478571Ld14P006G05G111F1_038.ab1    18 
   59  C KSU017_F06_BF478571Ld14P006G05G111R1_038.ab1   803 
   73    KSU016_F06_BF478571Ld14P006G05G111F1_038.ab1    56 
   85  C KSU017_F06_BF478571Ld14P006G05G111R1_038.ab1   777 
   93    KSU016_F06_BF478571Ld14P006G05G111F1_038.ab1    76 
  101  C KSU017_F06_BF478571Ld14P006G05G111R1_038.ab1   761 
  129    KSU016_F06_BF478571Ld14P006G05G111F1_038.ab1   112 
  185  C KSU017_F06_BF478571Ld14P006G05G111R1_038.ab1   677 
  189    KSU016_F06_BF478571Ld14P006G05G111F1_038.ab1   172 
  353  C KSU017_F06_BF478571Ld14P006G05G111R1_038.ab1   509 
  844    KSU016_F06_BF478571Ld14P006G05G111F1_038.ab1   827 
Contig length: old 961, new 962

Contig length: old 962, new 962
New start: 0