No. words: 1389; after pruning: 1363


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:964)  401  0.71 0.00 0.00  KSU002_G07_BF478571Tu01P006G05G111F1_052.ab1      205   628 (0)  C KSU003_G07_BF478571Tu01P006G05G111R1_052.ab1   (0)   761   338 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1    KSU002_G07_BF478571Tu01P006G05G111F1_052.ab1     1 
  414  C KSU003_G07_BF478571Tu01P006G05G111R1_052.ab1   552 
  422    KSU002_G07_BF478571Tu01P006G05G111F1_052.ab1   422 
  426  C KSU003_G07_BF478571Tu01P006G05G111R1_052.ab1   540 
  450    KSU002_G07_BF478571Tu01P006G05G111F1_052.ab1   450 
  462  C KSU003_G07_BF478571Tu01P006G05G111R1_052.ab1   504 
  474    KSU002_G07_BF478571Tu01P006G05G111F1_052.ab1   474 
  478  C KSU003_G07_BF478571Tu01P006G05G111R1_052.ab1   488 
  482    KSU002_G07_BF478571Tu01P006G05G111F1_052.ab1   482 
  486  C KSU003_G07_BF478571Tu01P006G05G111R1_052.ab1   480 
Contig length: old 965, new 965

Contig length: old 965, new 965
New start: 0