No. words: 1879; after pruning: 1853


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.5 (1,1:1706)  166  0.58 0.00 0.00  KSU050_F05_BG313162Tu02P009F05F0111F1_037.ab1      799   970 (0)  C KSU051_F05_BG313162Tu02P009F05F0111R1_037.ab1   (0)   909   738 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  84 nodes

 44 str. conn. components

Path
    1    KSU050_F05_BG313162Tu02P009F05F0111F1_037.ab1     1 
  853  C KSU051_F05_BG313162Tu02P009F05F0111R1_037.ab1   855 
  857    KSU050_F05_BG313162Tu02P009F05F0111F1_037.ab1   857 
  861  C KSU051_F05_BG313162Tu02P009F05F0111R1_037.ab1   847 
  869    KSU050_F05_BG313162Tu02P009F05F0111F1_037.ab1   869 
  873  C KSU051_F05_BG313162Tu02P009F05F0111R1_037.ab1   835 
  881    KSU050_F05_BG313162Tu02P009F05F0111F1_037.ab1   881 
  885  C KSU051_F05_BG313162Tu02P009F05F0111R1_037.ab1   823 
  897    KSU050_F05_BG313162Tu02P009F05F0111F1_037.ab1   897 
  905  C KSU051_F05_BG313162Tu02P009F05F0111R1_037.ab1   803 
Contig length: old 1707, new 1707

Contig length: old 1707, new 1707
New start: 0