No. words: 1693; after pruning: 1667


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 13.8 (1,1:1005)  666  0.29 0.00 0.00  KSU050_B08_BG606980As02P009H05H0111F1_062.ab1      115   800 (0)  C KSU051_B08_BG606980As02P009H05H0111R1_062.ab1   (1)   892   207 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1    KSU050_B08_BG606980As02P009H05H0111F1_062.ab1     1 
  379  C KSU051_B08_BG606980As02P009H05H0111R1_062.ab1   628 
  387    KSU050_B08_BG606980As02P009H05H0111F1_062.ab1   387 
  403  C KSU051_B08_BG606980As02P009H05H0111R1_062.ab1   604 
  407    KSU050_B08_BG606980As02P009H05H0111F1_062.ab1   407 
  419  C KSU051_B08_BG606980As02P009H05H0111R1_062.ab1   588 
  467    KSU050_B08_BG606980As02P009H05H0111F1_062.ab1   467 
  479  C KSU051_B08_BG606980As02P009H05H0111R1_062.ab1   528 
  487    KSU050_B08_BG606980As02P009H05H0111F1_062.ab1   487 
  495  C KSU051_B08_BG606980As02P009H05H0111R1_062.ab1   512 
  519    KSU050_B08_BG606980As02P009H05H0111F1_062.ab1   519 
  523  C KSU051_B08_BG606980As02P009H05H0111R1_062.ab1   484 
  635    KSU050_B08_BG606980As02P009H05H0111F1_062.ab1   635 
  643  C KSU051_B08_BG606980As02P009H05H0111R1_062.ab1   364 
Contig length: old 1006, new 1006

Contig length: old 1006, new 1006
New start: 0