No. words: 1218; after pruning: 1192


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.6 (1,1:448)  444  0.00 0.00 0.00  KSU041_B07_BM134276Ld02P009A06A121F2_061.ab1        1   448 (181)  C KSU042_B07_BM134276Ld02P009A06A121R2_061.ab1   (140)   449     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C KSU042_B07_BM134276Ld02P009A06A121R2_061.ab1   589 
  304    KSU041_B07_BM134276Ld02P009A06A121F2_061.ab1   164 
  312  C KSU042_B07_BM134276Ld02P009A06A121R2_061.ab1   278 
  364    KSU041_B07_BM134276Ld02P009A06A121F2_061.ab1   224 
  372  C KSU042_B07_BM134276Ld02P009A06A121R2_061.ab1   218 
  472    KSU041_B07_BM134276Ld02P009A06A121F2_061.ab1   332 
  480  C KSU042_B07_BM134276Ld02P009A06A121R2_061.ab1   110 
  504    KSU041_B07_BM134276Ld02P009A06A121F2_061.ab1   364 
Contig length: old 769, new 769

Contig length: old 769, new 769
New start: 0