No. words: 1229; after pruning: 1203


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:452)  438  0.00 0.44 0.00  KSU041_D07_BM134276Ld04P009A06A121F2_057.ab1        1   452 (157)  C KSU042_D07_BM134276Ld04P009A06A121R2_057.ab1   (166)   454     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1  C KSU042_D07_BM134276Ld04P009A06A121R2_057.ab1   620 
  224    KSU041_D07_BM134276Ld04P009A06A121F2_057.ab1    56 
  228  C KSU042_D07_BM134276Ld04P009A06A121R2_057.ab1   393 
  332    KSU041_D07_BM134276Ld04P009A06A121F2_057.ab1   164 
  336  C KSU042_D07_BM134276Ld04P009A06A121R2_057.ab1   285 
  396    KSU041_D07_BM134276Ld04P009A06A121F2_057.ab1   228 
  400  C KSU042_D07_BM134276Ld04P009A06A121R2_057.ab1   221 
  532    KSU041_D07_BM134276Ld04P009A06A121F2_057.ab1   364 
  544  C KSU042_D07_BM134276Ld04P009A06A121R2_057.ab1    77 
  552    KSU041_D07_BM134276Ld04P009A06A121F2_057.ab1   384 
  584  C KSU042_D07_BM134276Ld04P009A06A121R2_057.ab1    37 
  588    KSU041_D07_BM134276Ld04P009A06A121F2_057.ab1   420 
Contig length: old 776, new 777

Contig length: old 777, new 777
New start: 0