No. words: 1228; after pruning: 1202


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:448)  439  0.00 0.22 0.00  KSU041_H07_BM134276Ld08P009A06A121F2_049.ab1        1   449 (162)  C KSU042_H07_BM134276Ld08P009A06A121R2_049.ab1   (167)   450     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C KSU042_H07_BM134276Ld08P009A06A121R2_049.ab1   617 
  530    KSU041_H07_BM134276Ld08P009A06A121F2_049.ab1   362 
  542  C KSU042_H07_BM134276Ld08P009A06A121R2_049.ab1    76 
  550    KSU041_H07_BM134276Ld08P009A06A121F2_049.ab1   382 
  558  C KSU042_H07_BM134276Ld08P009A06A121R2_049.ab1    60 
  562    KSU041_H07_BM134276Ld08P009A06A121F2_049.ab1   394 
  582  C KSU042_H07_BM134276Ld08P009A06A121R2_049.ab1    36 
  590    KSU041_H07_BM134276Ld08P009A06A121F2_049.ab1   422 
Contig length: old 779, new 779

Contig length: old 779, new 779
New start: 0