No. words: 1195; after pruning: 1169


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:412)  392  0.97 0.24 0.00  KSU041_D08_BM134276Ld12P009A06A121F2_058.ab1        1   413 (202)  C KSU042_D08_BM134276Ld12P009A06A121R2_058.ab1   (166)   414     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  198 nodes

 101 str. conn. components

Path
    1  C KSU042_D08_BM134276Ld12P009A06A121R2_058.ab1   580 
  398    KSU041_D08_BM134276Ld12P009A06A121F2_058.ab1   231 
  402  C KSU042_D08_BM134276Ld12P009A06A121R2_058.ab1   179 
  406    KSU041_D08_BM134276Ld12P009A06A121F2_058.ab1   239 
  414  C KSU042_D08_BM134276Ld12P009A06A121R2_058.ab1   167 
  490    KSU041_D08_BM134276Ld12P009A06A121F2_058.ab1   323 
  494  C KSU042_D08_BM134276Ld12P009A06A121R2_058.ab1    87 
  514    KSU041_D08_BM134276Ld12P009A06A121F2_058.ab1   347 
Contig length: old 782, new 782

Contig length: old 782, new 782
New start: 0