No. words: 1710; after pruning: 1684


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.5 (1,1:696)  689  0.00 0.00 0.00  KSU041_E09_BM134287Ld05P009B06B121F2_071.ab1        1   697 (148)  C KSU042_E09_BM134287Ld05P009B06B121R2_071.ab1   (168)   697     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C KSU042_E09_BM134287Ld05P009B06B121R2_071.ab1   865 
  188    KSU041_E09_BM134287Ld05P009B06B121F2_071.ab1    20 
  216  C KSU042_E09_BM134287Ld05P009B06B121R2_071.ab1   650 
  240    KSU041_E09_BM134287Ld05P009B06B121F2_071.ab1    72 
  248  C KSU042_E09_BM134287Ld05P009B06B121R2_071.ab1   618 
  260    KSU041_E09_BM134287Ld05P009B06B121F2_071.ab1    92 
  276  C KSU042_E09_BM134287Ld05P009B06B121R2_071.ab1   590 
  296    KSU041_E09_BM134287Ld05P009B06B121F2_071.ab1   128 
  312  C KSU042_E09_BM134287Ld05P009B06B121R2_071.ab1   554 
  328    KSU041_E09_BM134287Ld05P009B06B121F2_071.ab1   160 
  352  C KSU042_E09_BM134287Ld05P009B06B121R2_071.ab1   514 
  360    KSU041_E09_BM134287Ld05P009B06B121F2_071.ab1   192 
  384  C KSU042_E09_BM134287Ld05P009B06B121R2_071.ab1   482 
  400    KSU041_E09_BM134287Ld05P009B06B121F2_071.ab1   232 
  420  C KSU042_E09_BM134287Ld05P009B06B121R2_071.ab1   446 
  424    KSU041_E09_BM134287Ld05P009B06B121F2_071.ab1   256 
  680  C KSU042_E09_BM134287Ld05P009B06B121R2_071.ab1   186 
  700    KSU041_E09_BM134287Ld05P009B06B121F2_071.ab1   532 
  736  C KSU042_E09_BM134287Ld05P009B06B121R2_071.ab1   130 
  740    KSU041_E09_BM134287Ld05P009B06B121F2_071.ab1   572 
  776  C KSU042_E09_BM134287Ld05P009B06B121R2_071.ab1    90 
  780    KSU041_E09_BM134287Ld05P009B06B121F2_071.ab1   612 
  792  C KSU042_E09_BM134287Ld05P009B06B121R2_071.ab1    74 
  804    KSU041_E09_BM134287Ld05P009B06B121F2_071.ab1   636 
  820  C KSU042_E09_BM134287Ld05P009B06B121R2_071.ab1    46 
  828    KSU041_E09_BM134287Ld05P009B06B121F2_071.ab1   660 
  832  C KSU042_E09_BM134287Ld05P009B06B121R2_071.ab1    34 
  836    KSU041_E09_BM134287Ld05P009B06B121F2_071.ab1   668 
Contig length: old 1013, new 1013

Contig length: old 1013, new 1013
New start: 0