No. words: 1666; after pruning: 1640


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.5 (1,1:698)  690  0.00 0.00 0.00  KSU041_G10_BM134287Ld15P009B06B121F2_068.ab1        1   699 (141)  C KSU042_G10_BM134287Ld15P009B06B121R2_068.ab1   (127)   699     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1  C KSU042_G10_BM134287Ld15P009B06B121R2_068.ab1   826 
  135    KSU041_G10_BM134287Ld15P009B06B121F2_068.ab1     8 
  139  C KSU042_G10_BM134287Ld15P009B06B121R2_068.ab1   688 
  147    KSU041_G10_BM134287Ld15P009B06B121F2_068.ab1    20 
  207  C KSU042_G10_BM134287Ld15P009B06B121R2_068.ab1   620 
  227    KSU041_G10_BM134287Ld15P009B06B121F2_068.ab1   100 
  231  C KSU042_G10_BM134287Ld15P009B06B121R2_068.ab1   596 
  235    KSU041_G10_BM134287Ld15P009B06B121F2_068.ab1   108 
  243  C KSU042_G10_BM134287Ld15P009B06B121R2_068.ab1   584 
  263    KSU041_G10_BM134287Ld15P009B06B121F2_068.ab1   136 
  271  C KSU042_G10_BM134287Ld15P009B06B121R2_068.ab1   556 
  287    KSU041_G10_BM134287Ld15P009B06B121F2_068.ab1   160 
  311  C KSU042_G10_BM134287Ld15P009B06B121R2_068.ab1   516 
  315    KSU041_G10_BM134287Ld15P009B06B121F2_068.ab1   188 
  335  C KSU042_G10_BM134287Ld15P009B06B121R2_068.ab1   492 
  347    KSU041_G10_BM134287Ld15P009B06B121F2_068.ab1   220 
  635  C KSU042_G10_BM134287Ld15P009B06B121R2_068.ab1   192 
  671    KSU041_G10_BM134287Ld15P009B06B121F2_068.ab1   544 
  675  C KSU042_G10_BM134287Ld15P009B06B121R2_068.ab1   152 
  683    KSU041_G10_BM134287Ld15P009B06B121F2_068.ab1   556 
  691  C KSU042_G10_BM134287Ld15P009B06B121R2_068.ab1   136 
  703    KSU041_G10_BM134287Ld15P009B06B121F2_068.ab1   576 
  743  C KSU042_G10_BM134287Ld15P009B06B121R2_068.ab1    84 
  759    KSU041_G10_BM134287Ld15P009B06B121F2_068.ab1   632 
  779  C KSU042_G10_BM134287Ld15P009B06B121R2_068.ab1    48 
  795    KSU041_G10_BM134287Ld15P009B06B121F2_068.ab1   668 
  799  C KSU042_G10_BM134287Ld15P009B06B121R2_068.ab1    28 
  803    KSU041_G10_BM134287Ld15P009B06B121F2_068.ab1   676 
Contig length: old 967, new 967

Contig length: old 967, new 967
New start: 0