No. words: 1485; after pruning: 1459


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.5 (1,1:696)  688  0.00 0.00 0.00  KSU050_B06_BM134287Tu02P009B06B0121F1_046.ab1        1   697 (49)  C KSU051_B06_BM134287Tu02P009B06B0121R1_046.ab1   (42)   697     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1  C KSU051_B06_BM134287Tu02P009B06B0121R1_046.ab1   739 
   70    KSU050_B06_BM134287Tu02P009B06B0121F1_046.ab1    28 
   86  C KSU051_B06_BM134287Tu02P009B06B0121R1_046.ab1   654 
  102    KSU050_B06_BM134287Tu02P009B06B0121F1_046.ab1    60 
  114  C KSU051_B06_BM134287Tu02P009B06B0121R1_046.ab1   626 
  134    KSU050_B06_BM134287Tu02P009B06B0121F1_046.ab1    92 
  150  C KSU051_B06_BM134287Tu02P009B06B0121R1_046.ab1   590 
  170    KSU050_B06_BM134287Tu02P009B06B0121F1_046.ab1   128 
  194  C KSU051_B06_BM134287Tu02P009B06B0121R1_046.ab1   546 
  198    KSU050_B06_BM134287Tu02P009B06B0121F1_046.ab1   156 
  286  C KSU051_B06_BM134287Tu02P009B06B0121R1_046.ab1   454 
  298    KSU050_B06_BM134287Tu02P009B06B0121F1_046.ab1   256 
Contig length: old 788, new 788

Contig length: old 788, new 788
New start: 0