No. words: 887; after pruning: 861


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 5.4 (1,1:284)  266  0.00 0.00 0.00  KSU014_C11_BM135193Ld03P006F06F121F1_091.ab1        5   285 (179)  C KSU015_C11_BM135193Ld03P006F06F121R1_091.ab1   (142)   281     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  142 nodes

 73 str. conn. components

Path
    1  C KSU015_C11_BM135193Ld03P006F06F121R1_091.ab1   423 
  334    KSU014_C11_BM135193Ld03P006F06F121F1_091.ab1   196 
  354  C KSU015_C11_BM135193Ld03P006F06F121R1_091.ab1    70 
  366    KSU014_C11_BM135193Ld03P006F06F121F1_091.ab1   228 
Contig length: old 602, new 602

Contig length: old 602, new 602
New start: 0