No. words: 1001; after pruning: 975


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.2 (1,1:465)  442  0.21 0.00 0.00  KSU006_H04_BM137730Tu02P006G06G121F1_032.ab1        1   466 (61)  C KSU007_H04_BM137730Tu02P006G06G121R1_032.ab1   (8)   466     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C KSU007_H04_BM137730Tu02P006G06G121R1_032.ab1   474 
   32    KSU006_H04_BM137730Tu02P006G06G121F1_032.ab1    24 
   40  C KSU007_H04_BM137730Tu02P006G06G121R1_032.ab1   435 
   56    KSU006_H04_BM137730Tu02P006G06G121F1_032.ab1    48 
   72  C KSU007_H04_BM137730Tu02P006G06G121R1_032.ab1   403 
   84    KSU006_H04_BM137730Tu02P006G06G121F1_032.ab1    76 
   88  C KSU007_H04_BM137730Tu02P006G06G121R1_032.ab1   387 
   92    KSU006_H04_BM137730Tu02P006G06G121F1_032.ab1    84 
  112  C KSU007_H04_BM137730Tu02P006G06G121R1_032.ab1   363 
  116    KSU006_H04_BM137730Tu02P006G06G121F1_032.ab1   108 
  181  C KSU007_H04_BM137730Tu02P006G06G121R1_032.ab1   294 
  185    KSU006_H04_BM137730Tu02P006G06G121F1_032.ab1   177 
  357  C KSU007_H04_BM137730Tu02P006G06G121R1_032.ab1   118 
  361    KSU006_H04_BM137730Tu02P006G06G121F1_032.ab1   353 
  401  C KSU007_H04_BM137730Tu02P006G06G121R1_032.ab1    74 
  405    KSU006_H04_BM137730Tu02P006G06G121F1_032.ab1   397 
Contig length: old 535, new 535

Contig length: old 535, new 535
New start: 0